RnoEX0027103 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22063588-22077923:-
Coord C1 exon
chr3:22077835-22077923
Coord A exon
chr3:22066554-22066682
Coord C2 exon
chr3:22063588-22063846
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCTCTCTTGTCCAGCCT
3' ss Score
8.59
5' ss Seq
ATGGTCTCT
5' ss Score
-5.63
Exon sequences
Seq C1 exon
GTAAGACCGCCTCGGCCGCATGTCATCAAGAGACCCAAGAGCAACATGGCTGTGGAAGGCCGGAGGACGTCCATCTCAAGCCCCGAGCA
Seq A exon
CCTGGTAAAGCCCTTGCGACACTATGCTGTCTTCCTCTCTGAAGACTCCTCTGATGAGGAATGCCGACGGGACAAGCCTCCCAGCACTGGCTTCACTGAAAGCCTTTTCTTCTCTGCTCCCTTTGAATG
Seq C2 exon
GCCACAGCCATACAGGACTTTGAAAGAATCAGACAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAGCAGCCAACTCGGGAGCCCTGGGGGCCTACCCCTGCTCCACCTGACCGAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCTAGATGTGGAGGCACCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTTCGGGTCCCCAGAGACTTGCGGGAACAGTCAGGCAGCTTTGATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX2-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.470 C2=0.776
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCATGTCATCAAGAGACC
R:
CCTCCACATCTAGGCTGCTGA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]