DreEX0003530 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8369500-8376337:+
Coord C1 exon
chr21:8369500-8369570
Coord A exon
chr21:8371358-8371486
Coord C2 exon
chr21:8376264-8376337
Length
129 bp
Sequences
Splice sites
3' ss Seq
CGTGCGTGTTGACGCTGTAGTTA
3' ss Score
3.14
5' ss Seq
ATGGTCTCT
5' ss Score
-5.63
Exon sequences
Seq C1 exon
GCTCGACCTCCTCGGCCATTGGTGGCAAAGAGACCTCGCAGTAACATTGGTGTAGAAGGAAGCCCTGAACA
Seq A exon
TTACGTGCGTCCAACCCGTCACTATACAGTGTTTCTGTGCGAGGACTCCTCGGGTGATGAGCTGTCTCAGGATGACGACTCCATTGCTGCTTTTCCTGAACACTTCCTGCTTTCTGCTCCTTTTGAATG
Seq C2 exon
GCCTCAGCCATACAGGTCTCTGAAAGAGGCAGAGCTTGTGGAAGAAGGTGTGGAGGTTGGGGAGCGATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.477 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACCTCCTCGGCCATT
R:
TTGGTATCGCTCCCCAACCTC
Band lengths:
143-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]