GgaEX0001254 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9025060-9034178:-
Coord C1 exon
chr17:9034090-9034178
Coord A exon
chr17:9026967-9027095
Coord C2 exon
chr17:9025060-9025315
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCTGTTTCCCTCAGCCT
3' ss Score
8.69
5' ss Seq
ATGGTCTAT
5' ss Score
-4.36
Exon sequences
Seq C1 exon
GTTCGTCCTCCAAGACCTCATATTGTTAAGAGACCCAAGAGCAACATTGCTGTGGAAGCAAGAAGGACTTCCATTTCCAGTCCAGAACA
Seq A exon
CCTTGTAAAGCCTATGCGACACTATACAGTCTTCCTCTCTGAGGACTCTTCTGATGATGAATTTCAGCAGGAAGAGGATCCTGTATCTGGCTTCTCTGAAAACTTTTTCTTCTCTGCTCCTTTTGAATG
Seq C2 exon
GCCGCAGCCATACCGGGCTCTGAAAGAATCTGATAGTGCTGATGGAGAAGAGGCTGTCAGTCCAGAAAAGGCAAAAGAGCCTCTGCCTCCAAGCCCTCTTCTCTTGAGCAACGCCACAGAAATCAACCTCCTTGAAGACATTTTCCCTAACTTAGAAGTAGAAACACAGCCTCAGCCTCTCAGCCAGGCTAAAAGCCTGGAAGACCTGCGGACTCCAAAAGAAGAGACAGATCAGCGATGCACGTTTGATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.455 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000001740fB124
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGCAAGAAGGACTTCCA
R:
CGCAGGTCTTCCAGGCTTTTA
Band lengths:
248-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]