GgaALTA0000478-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9751624-9765795:-
Coord C1 exon
chr17:9765664-9765795
Coord A exon
NA
Coord C2 exon
chr17:9751624-9751680
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTTCCACTTTGATACAGCAGCAA
3' ss Score
1.09
Exon sequences
Seq C1 exon
GACATAGCTGAGAATGGGTGTTCTGCAGCACCAGAGCAGTCTCTACCAAGACCAGCACCTTCTCCATTGGTTGAAAAGAAGGACACTAAATTAAGAGAGGACAGAAGACCAATCACAGTACATTTTGGTCAG
Seq A exon
NA
Seq C2 exon
CAAAGACTCCGTCCGCCTCGGCCACCGCCTCCAAAGATACAGCGTTCAACTAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-28-38,28-37-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGAAGACCAATCACAGT
R:
GGGCCTAGTTGAACGCTGTAT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]