MmuEX0019434 @ mm9
Exon Skipping
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:30900402-30903808:-
Coord C1 exon
chr2:30903725-30903808
Coord A exon
chr2:30903142-30903277
Coord C2 exon
chr2:30900402-30900416
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATCCACATCTGTGTTTGTAGCCT
3' ss Score
4.89
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ACTCAGTCTCTGTGTTATCACAAAGAGCTCATGAAGAGGACTCTAGGGAAACCCACACACGCCTTGGAGGCTAGGGACTATGTT
Seq A exon
CCTGTAGGTCACTAGGGAGTCATGTCACAAGCCTGGAGAACAAAAACTCAAAGAAGCATGGGCAGAGACGGTTCCAGGAGAGTTCACCAACTTGTGTCTGCTCGGGCACTTACCGTCCCCTTTCTTTGCGCTTGAG
Seq C2 exon
CTTTCTCTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-'20-22,'20-21,21-22
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154561=Uds1=PU(7.0=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: