MmuEX0019436 @ mm9
Exon Skipping
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:30895925-30909738:-
Coord C1 exon
chr2:30909544-30909738
Coord A exon
chr2:30900402-30900416
Coord C2 exon
chr2:30895925-30896034
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTCTTCAATTTCCCACGAAGCTT
3' ss Score
4.31
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GACTCCCAGCTGGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCTGGAGACATTGAATTCGAAGATTACACACAGCCAATGAAACGCACAGTGTCAGACAACAGCCTTTCCAGCTCCAAAGAAGGCAAGCCTGAGCTCAGATTTGGCGGCAAGTCCAGAGGCAAGCTCTGGCCATTCATCAAGAAAAACAAG
Seq A exon
CTTTCTCTCAAGCTG
Seq C2 exon
GGTGTCACACCAGAAGACTTCAGCAACTTCCCACCTGAGCAGAGAAGGAAAAAACTACAACAGAAAGTTGACGATCTCAATAGAGAGATACAGAAGGAGACGGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.552 A=0.000 C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF104814=CENP-F_N=FE(24.7=100),PF143891=Lzipper-MIP1=PU(32.5=73.0),PF154561=Uds1=PU(29.6=64.9),PF0218511=HR1=PU(24.2=40.5)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGATTTGGCGGCAAGTCC
R:
TCTCTGCTCAGGTGGGAAGTT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types