GgaEX0005471 @ galGal3
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
NA
Coordinates
chr17:6300068-6318991:-
Coord C1 exon
chr17:6318794-6318991
Coord A exon
chr17:6309377-6309391
Coord C2 exon
chr17:6300068-6300177
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCCAATTTTTACATGAAGCTT
3' ss Score
4.45
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GATTCACAAATGGTAATAGAAGCCTTTAAATCAGGGTTTGAGCCTCCAGGAGATGTTGACTTTGAGGACTTCACTCAGCCCATGAAGCGGACTGTCTCCGAATCCAGCCTTTCCAACTCCAGAGGGGATGGGAAGTATGAGCCGAAGTTTGGTGGCAAATCCAAGGGCAAGTTATGGCCATTCATCAAGAAAAATAAG
Seq A exon
CTTTCTCTCAAGCTG
Seq C2 exon
GGAGCAGGGCCAGAGGACTTCAGCAATCTCCCACCTGAACAAAGAAGAAAGAAACTTCAGCAAAAAGTGGATGAGCTCAACAAAGACATTCAGAAGGAGATGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.652 A=0.200 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF122293=PG_binding_4=FE(4.0=100)
C2:
PF122293=PG_binding_4=FE(36.4=100),PF143891=Lzipper-MIP1=PU(34.5=78.4),PF154561=Uds1=PU(36.4=86.5),PF0218511=HR1=PU(25.8=43.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGATGGGAAGTATGAGCC
R:
GATTGCTGAAGTCCTCTGGCC
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event