GgaEX0005470 @ galGal3
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
NA
Coordinates
chr17:6309377-6318991:-
Coord C1 exon
chr17:6318794-6318991
Coord A exon
chr17:6317240-6317422
Coord C2 exon
chr17:6309377-6309391
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCTCCATCTCTTATACGTAGCTT
3' ss Score
6.09
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GATTCACAAATGGTAATAGAAGCCTTTAAATCAGGGTTTGAGCCTCCAGGAGATGTTGACTTTGAGGACTTCACTCAGCCCATGAAGCGGACTGTCTCCGAATCCAGCCTTTCCAACTCCAGAGGGGATGGGAAGTATGAGCCGAAGTTTGGTGGCAAATCCAAGGGCAAGTTATGGCCATTCATCAAGAAAAATAAG
Seq A exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCCCCTCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGCGGG
Seq C2 exon
CTTTCTCTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-'15-20,'15-13,16-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.652 A=0.689 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF122293=PG_binding_4=PU(15.2=24.6)
C2:
PF122293=PG_binding_4=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event