BtaEX0014840 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100303724-100314811:-
Coord C1 exon
chr11:100314614-100314811
Coord A exon
chr11:100313477-100313659
Coord C2 exon
chr11:100303724-100303833
Length
183 bp
Sequences
Splice sites
3' ss Seq
GCTCCATCTCTTACACGTAGCTT
3' ss Score
4.92
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GATTCACAGCTGGTCGTAGAAGCTTATAAGTCTGGGTTCGAGCCTCCAGGAGACATTGAATTTGAGGATTACACTCAGCCTATGAAACGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAATCAGAGCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCATTCATCAAAAAAAATAAG
Seq A exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCACCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGTCTAAAGCGTGGG
Seq C2 exon
GGCGCGACACCAGAAGATTTCAGCAACCTCCCACCCGAACAGAGAAGGAAAAAGCTCCAGCAGAAAGTCGATGAATTAAATAAAGAAATCCAAAAGGAAATGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.710 C2=0.928
Domain overlap (PFAM):
C1:
PF078236=CPDase=PD(1.3=3.0)
A:
NO
C2:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(24.2=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTCTGGGTTCGAGCCTCC
R:
CATCGACTTTCTGCTGGAGCT
Band lengths:
245-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development