RnoEX0036521 @ rn6
Exon Skipping
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9878072-9887262:-
Coord C1 exon
chr3:9887068-9887262
Coord A exon
chr3:9885986-9886168
Coord C2 exon
chr3:9878072-9878086
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCCGCCCCCCTCACATATAGCTT
3' ss Score
7.08
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACTCCCAGCTAGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCCGGAGACATTGAATTCGAAGATTACACACAGCCCATGAAACGCACGGTGTCAGACAACAGCCTTTCCAGTTCCAAAGAAGGCAAGCCCGAGCTCAAGTTTGGAGGCAAGTCCAGAGGCAAGCTCTGGCCGTTCATCAAGAAAAACAAG
Seq A exon
CTTATGACCCTTTTAACATCCCCCCACCAGCCTCCCCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGG
Seq C2 exon
CTTTCGCTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258_MULTIEX1-2/3=1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.711 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]