MmuEX0019443 @ mm10
Exon Skipping
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31044882-31054218:-
Coord C1 exon
chr2:31054024-31054218
Coord A exon
chr2:31052985-31053167
Coord C2 exon
chr2:31044882-31044896
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTCCACCCCTCACATTGTAGCTT
3' ss Score
7.83
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACTCCCAGCTGGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCTGGAGACATTGAATTCGAAGATTACACACAGCCAATGAAACGCACAGTGTCAGACAACAGCCTTTCCAGCTCCAAAGAAGGCAAGCCTGAGCTCAGATTTGGCGGCAAGTCCAGAGGCAAGCTCTGGCCATTCATCAAGAAAAACAAG
Seq A exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCTCCGCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCCAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGG
Seq C2 exon
CTTTCTCTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-'43-42,'43-34,48-42
Average complexity
C2
Mappability confidence:
94%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.567 A=0.719 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types