DreEX0033190 @ danRer10
Exon Skipping
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6235724-6268459:+
Coord C1 exon
chr21:6235724-6235918
Coord A exon
chr21:6244132-6244227
Coord C2 exon
chr21:6268350-6268459
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACCCCTGCCCCGCTCCCCAGACC
3' ss Score
10.09
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GACTCATCTCAGGTCATTGAGTCGTATAAGTCCGGCTTCGAGCCTCCCGGCGATGTGGAGTTCGAGGACTACGGTCAGGCCATGAAGAGGACGGTTTCTGAGACCAGCCTGACCAACTCACGCTCAGAAAACAAACCTGAACGCTCCAGCAAGAGCAAGAGCAAAACCCTCTGGCCTTTTATTAAGAAAAACAAG
Seq A exon
ACCCCCAAACAGTGCAAGGAGCCCCTGTCGCACCGCTTCAACGACCTCATGACCTCCAAGCCCAGAATGCAGTGCCTCAGGAGCCTGCGGCGAGGG
Seq C2 exon
GGTTCCAATCCTGAGGACTTCAGTCATCTTCCTCCAGAGCAGAGACGGAAGAAGCTGCAGGCCAAGATTGACGACATCAATAAAGACATACAGAAAGAGATGGATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028_MULTIEX1-1/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=0.918 C2=0.996
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(23.2=43.2)
Main Inclusion Isoform:
ENSDART00000163577fB2810
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAGACCAGCCTGACCAA
R:
ATCTTGGCCTGCAGCTTCTTC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]