DreEX0033191 @ danRer10
Exon Skipping
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6259638-6268459:+
Coord C1 exon
chr21:6259638-6259652
Coord A exon
chr21:6259916-6259951
Coord C2 exon
chr21:6268350-6268459
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTGACTGTCCCTCTGTGTAGCTC
3' ss Score
8.66
5' ss Seq
GAGGTGATC
5' ss Score
3.49
Exon sequences
Seq C1 exon
CTCTCTCTGAAGCTG
Seq A exon
CTCTCACTCAATGCCCACGTGCGGAACCTTATCGAG
Seq C2 exon
GGTTCCAATCCTGAGGACTTCAGTCATCTTCCTCCAGAGCAGAGACGGAAGAAGCTGCAGGCCAAGATTGACGACATCAATAAAGACATACAGAAAGAGATGGATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028_MULTIEX1-3/3=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.250 C2=0.996
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(23.2=43.2)
Main Inclusion Isoform:
ENSDART00000161647fB2811
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]