DreEX6103911 @ danRer10
Exon Skipping
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6235724-6268459:+
Coord C1 exon
chr21:6235724-6235918
Coord A exon
chr21:6259638-6259652
Coord C2 exon
chr21:6268350-6268459
Length
15 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCGTCCATGAGAAGCTC
3' ss Score
1.26
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GACTCATCTCAGGTCATTGAGTCGTATAAGTCCGGCTTCGAGCCTCCCGGCGATGTGGAGTTCGAGGACTACGGTCAGGCCATGAAGAGGACGGTTTCTGAGACCAGCCTGACCAACTCACGCTCAGAAAACAAACCTGAACGCTCCAGCAAGAGCAAGAGCAAAACCCTCTGGCCTTTTATTAAGAAAAACAAG
Seq A exon
CTCTCTCTGAAGCTG
Seq C2 exon
GGTTCCAATCCTGAGGACTTCAGTCATCTTCCTCCAGAGCAGAGACGGAAGAAGCTGCAGGCCAAGATTGACGACATCAATAAAGACATACAGAAAGAGATGGATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028-'9-18,'9-16,13-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=0.450 C2=0.996
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(23.2=43.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCAAGAGCAAGAGCAA
R:
CTGCAGCTTCTTCCGTCTCTG
Band lengths:
112-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]