RnoEX0036509 @ rn6
Exon Skipping
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9873376-9887262:-
Coord C1 exon
chr3:9887068-9887262
Coord A exon
chr3:9878072-9878086
Coord C2 exon
chr3:9873376-9873485
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTCTTCAATTTTCCGTGAAGCTT
3' ss Score
5.26
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GACTCCCAGCTAGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCCGGAGACATTGAATTCGAAGATTACACACAGCCCATGAAACGCACGGTGTCAGACAACAGCCTTTCCAGTTCCAAAGAAGGCAAGCCCGAGCTCAAGTTTGGAGGCAAGTCCAGAGGCAAGCTCTGGCCGTTCATCAAGAAAAACAAG
Seq A exon
CTTTCGCTCAAGCTG
Seq C2 exon
GGTGTCACCCCGGAAGACTTCAGCAACTTCCCGCCTGAGCAGAGAAGGAAAAAACTACAACAGAAAGTGGACGATCTCAATAAAGAGATCCAAAAGGAGACCGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258-'14-19,'14-18,21-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.000 C2=0.930
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF143891=Lzipper-MIP1=PU(33.7=73.7),PF154561=Uds1=PU(30.4=63.2),PF0218511=HR1=PU(25.8=42.1)
Main Skipping Isoform:
ENSRNOT00000042798fB5641
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCAAAGAAGGCAAGCCC
R:
GCGGGAAGTTGCTGAAGTCTT
Band lengths:
115-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]