MmuEX0019436 @ mm10
Exon Skipping
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31040405-31053167:-
Coord C1 exon
chr2:31052985-31053167
Coord A exon
chr2:31044882-31044896
Coord C2 exon
chr2:31040405-31040514
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTCTTCAATTTCCCACGAAGCTT
3' ss Score
4.31
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCTCCGCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCCAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGG
Seq A exon
CTTTCTCTCAAGCTG
Seq C2 exon
GGTGTCACACCAGAAGACTTCAGCAACTTCCCACCTGAGCAGAGAAGGAAAAAACTACAACAGAAAGTTGACGATCTCAATAGAGAGATACAGAAGGAGACGGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-'48-44,'48-42,54-44
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.719 A=0.037 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF104814=CENP-F_N=FE(24.7=100),PF143891=Lzipper-MIP1=PU(32.5=73.0),PF154561=Uds1=PU(29.6=64.9),PF0218511=HR1=PU(24.2=40.5)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGCTTCAACGAGTTCAT
R:
TCTCTGCTCAGGTGGGAAGTT
Band lengths:
112-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types