MmuINT0065293 @ mm10
Intron Retention
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31040405-31044896:-
Coord C1 exon
chr2:31044882-31044896
Coord A exon
chr2:31040515-31044881
Coord C2 exon
chr2:31040405-31040514
Length
4367 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
ATTTATGTTTGTGTCTGCAGGGT
3' ss Score
9.67
Exon sequences
Seq C1 exon
CTTTCTCTCAAGCTG
Seq A exon
GTAAGCACCACATCCCGTGCATGTCCCTGGTCTAATTGGGTTCTGGTGTGTGCTGTGTGTGCTCTGCCCCGGGCAGCCTGCCCCCGACATTAACTGTTCCCCTTCATTCTCCTGTGGGTGCTTTTGTTGGTGTTTGGTTGCGTGACTGTCTTACTTACTAAGAAAATTAATGCTTAACATGATTTTATTTTATTTTACTTTGGGGACCTTAGAGTTGCCAAGCATTGATCAATTATCTATATTCATTTGAATGTAATTGTCAGAAATTGAGGAGCAGGGGGGGGGGTCTTCCTACTGGATCATTCTGGGTAGGTAGTCCCTTCCTGGGAGCCACAGGAGTAGATAGGTAAAAACAAAAAACAAAACAAAACTGAGAGCCTAAAGGAGACACTGGGGAGGCAGAGGCAGGAGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTGCAGAGTGAGTTCCAGGCCAGCCAGAGCTATGTAGAGAGACCCTGAAGGAGACAGTCATGCATGTGTCATGCCTGTCATGACTGCTCAGGTTTCTGGTAGGGAAGACCAGTGGGAAGCTATGATCTTTGGTGGGAGCATTGGGTAAAGCTGATTCCAGGGGCCATAGATGCTTTGATGGACAAAGAGAACTCCTGGTCCATCCTTGCCTGAGCTATCTACCTAGCATCTGTCTGTCTTGCTTCTCCTTCATGGTGTAATTCAAGCAAACAGCCTGAGTAACTGATTTATTAAAAGAAAATCTTAACCAACATAACCCACTATGCTTTGAGAATGAATGAGGACTGCGGACATGGTTCATGGTTCAGTAGTAGAGTCTGCCTAACACAGGCAAAGTCCCAGATTCCATCCCCAGCCACACACACACACACACACACACACACACACAAAGATTAAAGTCATGGAATCTTCCTGAATGCCAAGGCAGAGCAATTCCTCCATTCTCACAGTAATGGACCATGTTAGCTAACCACAGAGTAATACCTGGGGTATCACTCTTGCTGGGTGTCCTACTCTTGATGGCCTGGCATGACATGTGCCATGTGCCCATGAATTTCCTGTAGCTGTGCACATGCATACGTGTACATACATCATTTCTCAACTGACTCTATTTTATCCACAGTCCAGTCAATCTCAAAGACATATATAATTAATTTTTTTATTAAATAATATTTCTCAAAAATGAAACCCCGGGAAGAGTCTGCAGTCAAGAGGGGTCTCTCAGATGGAAGAGGTCTGGATGCTGAATAACTTTAAGCAGTCTTTCCTTTTGGGAAACAAATCCTTTCACCAGCTTGGGAGTGGGCTGTTGCTTCCATGGCATTTAGAGATGGCACAGTGGGTAGGGCTGCTTGTCCTGACAAGCTTGAAGGCATGTTTAAATTCCAATACCATCAAGAAAGCCAAGTATGGCTGCATATATCTTCAGCCCTGGCACTGAGGGGTGGAGATAGGTGAGTGTGAGGAAGGCACTGGGGCACCCAGCCTCAACTGAAAAGCCAGATCCAAGGCTGTAAGATACAGAGGGAGAAAGATGCCTGACGTCCAGCTGGAGCAACCCCTTGGGTATGCACGCATCAGCATGTACCACAAACATGCACACAGACGTGAACTATGAGGTAGAAAATGAATTGGCTGTACAAGCAAACATCTGTTTTATCCGGGCTTGTGCCCGGGAGCAGTGTGGGTCCCATCAGAAGATGGGGCAAGGCCGAATACAGACCCCTCTAACCTGGGTGTGTCTGGCCACACCCTCCAGGGCAGGTTCCACCATTCTACAAACTGGGTCACTCTGGCTGTGTCAGAGACATCCCCCATGACTCAGCGCTAGAAACAAGAGCCCCTTCTCCGCAGAGTGAGTCACCTGCCACAGCTTTGTTTGAGAAAATCTAAACTTCAAAAGCCCAATTGGGTGAGACACCCTTTCTATAGATCCTAAGTTTCTATGAGAAGCTGCTGACCTGAATCTCCATAGCAACCAAGGTGTGAGGTTTTCCCAGTGACTTGTTTTCAAGTAATAACACTGTTGACATAGCCAGGGTAGCTATTGAGAGGGACCTGGCTCTTCGATGGACCTTTTATCAATTGAAGATGATGATTTTGTTGTCATGAGTAACTAGTCCTTCCTCTTCTAGGGCCAGTCACAAGCCACCAGCCTGCAGTGTTCCTTACAGGCGTCTCCAAAGCCATTCAGATGCCGTCCAAGCCTCATACATGTCCTAAGAGTCGGGTCACCACTGAACCAGCCACATTCAAGTGGGGCAGTCAGCTGTAGTAGCTGTACAGTGCAGCCACACAATGTCCCCAGCATCACAGAAAGTTCTAGAAGGCTCTCTGGCCACTGCCCAGATCACCTTGCTGACACAACTCCATGACTTGCATTGAATTTTGTTCCGTCTGAGATTTAAAAGCAAAACAAACAAAACCTCAGGGCTGGGAAAATGAGTCCAGAGGCGAAAGTATTTATAAGCCCAGCAGCAGGCAGACGTGTATATAAGCCTAGCACTGTGTGGGTAGAGTATGCAATGGGAAACAACCAAGATACCCTGTCTCAAACTACACACACACACATACACCAATCTAGGAAACAATGATCAGGGTCGCCAAGCTGGCTCACTGGAATGGGCTGTTTGGTGCTAACCCGATGAATTCCAGAGACCCACATGGTTGAAAGATGGAGCTGACTCCCACAGATTGTAGAATGAATACATATTGTAAAGATGGATTTTCCTCCAAGCTCAGTGCTTAAATAGAATGAGTAGAAAGCTAGACAGTGATGTTTCACTAGTGTGCGTGGGAGAGGGGAGCCGCTGGCCTGTAGGACCATGCTTGGCCTGGTGACAGGAATACTGCCCATCCTCTCCCGCTCCCACACCCACCACACACCCAGGGGGTCTCAGGATGGAGTGCTGACCTCCACCTGGCCTAAGGGGCGAGCCATTTGCTGACTCCTGTGCTCCCCCGGCAGCAGCTTCTCCTAATCAGCCTAGAAGCCTCTGTCACAAGCCCCCATGTAAGCTGCTTGGCAAATCCAGCTGGATTCCAGAATCACGTTCCCTGGGCCACCAAGTCAGTCTCGCTCTTGTTTGAAAAGAATTGAGGTTTTCAAGTAAAATCTCTTTTTATAAATTTCCTGGCTTTCTCTGGGTCCATTGAATACATTTCATTCTTTATGAAAATGGCCTCACTTAAGGAAGAGCTCTTGTACTGCCTTGAAGCCAAGGAGGCAGTCCTTGGAGGAAGACCAGCTCCCCGAGAGCGCCTACTGAAAGTACAGTAAGAGCCAACAGTGCAGTAGGAGCTTAAGAGAGTCCCAGCCAGGTGTGGTGACTCATGCCTGCGACCCTGGCACTCGGGAGTCTGAGTCTGAAGGATTGCACTCAGCTGAGCCAGAGCTGGAGAGACGGCTTGGTAGTTAGGAGAATGCAGAAGACCCAAGTTCTTTTCCAACATCCTGTAGCTCACGACCACCTGTAACTCATTCCAGGGACCCTAATGCCCTCTTCACTGAACACACAGGTGCACGTGTGCATATGGGCTATGGGCACTTACACATACAATTTTAAAATAAAATCTTTTAAGTCTGGGGAGGGGGGATCAGGAGCTAGATGTGGTGGTTTACCCCTTTAATTCCACTACCTAGAAAACTAAGGCAGGGGGATCACTGTGAGTTTGAGACTGTAGTCTGGAAGTACAATGCATGTCTAGCACATGTAGGCCTCAGGTTCAACCCTGCAGAGAAGGGGTCAGGGCGTGTTACCACACGCTCTGACAGTAGAAGCACGGGAGGTTGGTTTTGTACACTGTAGGAAGTAAATCTGGGGTCCCAGAGTCAGCGAGGGACAAGTGACACCAGAAGGGGGTGATGGTTTTTAAATCGTACTTTTTGCTCACATCCACAATGGAAAGCCTGTCTGTCATCTCACAGGGGCAGGAGCTCTGACTGCCTCAGCATTGAGAGGAGAGATGGTTAGGGACACTTCAACTAAGGGGAAAGCAGAGACTTAGACACAATACTGACAGGAACTGGATTACATTAGAGAAGCGTCACTTCCTGTCCTGGGTGGGAATAGTCAGAGTATGCAGTCTCTAAATGTGTCTTTGGGTCTCCTTCTGGGTCAGAGCTATTTCCCCCCATCTCTCCTGCGGTGTGGTTGACCCTGGCCTTCCCTGTGTTGCTCTGGCCCTTGCAGATGACACGTGGTGATTTGTGGGACTTCCCAGGTCTGCATGTGTTTGATTTTTGCATCTCAGCTGGTGCAGCAGGGAAACATAGCTGGCTCAGCAGGTCTGCAGGCTTGGTCTGCCTGCTCCTGCCCAGGGGCACTGCAAGGCTCTCTGGTGTCTCATTTATGTTTGTGTCTGCAG
Seq C2 exon
GGTGTCACACCAGAAGACTTCAGCAACTTCCCACCTGAGCAGAGAAGGAAAAAACTACAACAGAAAGTTGACGATCTCAATAGAGAGATACAGAAGGAGACGGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415:ENSMUST00000113560:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104814=CENP-F_N=FE(24.7=100),PF143891=Lzipper-MIP1=PU(32.5=73.0),PF154561=Uds1=PU(29.6=64.9),PF0218511=HR1=PU(24.2=40.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types