RnoINT0061832 @ rn6
Intron Retention
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9873376-9878086:-
Coord C1 exon
chr3:9878072-9878086
Coord A exon
chr3:9873486-9878071
Coord C2 exon
chr3:9873376-9873485
Length
4586 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
ACTTATGTTTGTGTCTGCAGGGT
3' ss Score
10.12
Exon sequences
Seq C1 exon
CTTTCGCTCAAGCTG
Seq A exon
GTAAGCACAACGTTCTCCGTGCATGTCCTTGGTCTAATTGGGTTCTGGTGTGTGCTGTGTGTGCTCTGCAGCCTGCCTCCGACATTAACTGTTCACCTGTTCATTTCTCCCGTGGGCGCTTTTGGTGGTGTGTATTTCACCTCTGGTTGCGTGGCTGTCTTGTTCACTAAGAAAATTAATGCTTAACATTATTCGATTTTTTTTTTTTAAACTTTGGGGACCTCAGAGTTGCCAAGCATTGATCAACTCTCTGTATTCATCTAAAAGCAAATGTCAGAAGTTGGGGTGAGTCTTCCTACCGGATCATTCTGGGTCAAAATAAATTTAAAGAGTTGGAAGGCAGCCCTTCCTGGGAGCCACAGAAGTAGATATTTCACACACACACACACACACACACACACACACACACACACACACACACAAACTGTGCGCCTAAAGGAGACACTTGGGAGGCAGAGGCAGGCGGATCTCTGGGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAAGTTCCAGGCCAGCCAGAGCTATTTAGAGAGACCTTAAAGGAGACACTCAGGCATTCGTCGTGCCTGTCATGACTGCTCAAGTTTTTGGTAGGGAAGACCAGTGGGAAGCTACGGTCTTCTGGGGGAGCATTGGGTAAAACTGATTCCAGGGGCCACAGATGCTTTGATGAAAAGGGGAACTCTCCCTCATCGTCCATCCTTGCTTGAGCTGATATCTCGCTACATCTGTCTGTCTTTCGTCTCCTTCATGGGGCAGCTCCAGCGAACAGCCCGAGTAACTGTTTGATTTACCAAAAGAAAATCTTAACCAACATAACCCACTATGCTTTGAGAATGAATGAGGACTGAGGACTTGGCCCAGGGGTACAGTGTCTGCCTAATACAGACCCTCAACACCACAAAAAAATAAAATGAAATGAAATAAAGATGAATTTCACAGAATTCCCCTGAGTGCCAAGGCAGAGCAGACTCCTGCGTTCTCGCAGTGAGGGACGTGTGAGCTAACCACGGAGTAATACTGGGGGCATTACTCTTGCTGGGGGTCCTGCCTTGATGGCCTGACGTGACATGTGACTGTGACTCTCATGTACATGCACACATGGACATACATCATTTCCCAACTGACTCTTTTTTATCCGCAGTCCAGTCAATCTCAAAGCAAAAAATATATTTTATTAAATAACATTTCTCAGACATAAAACCCCAGGAACGAAGAGTCTGCAGTCCAGAGGTCTCGCCCGGGGAGGGAAGAGGCTTGGATGCCGAATGACGCTAAGCAGTCTTTCCTTTTGGGATACAAATCCTTTCACCAGCTTGGGAGTGAGCGGCTGATTCTGTGGCATTTAGAGATGGCTCAGTGGGTAGGGCAGCTTGCTCTTACAGGCCTGAGGACGTGCTCAAGGCAAGTACAGCTGTGTATATCTTCAACCCCAGCACTGAGGGGTGGAGACAGGTGAGTCCCAGAGGAAGCCACTCCTCACCGAAAAGCCAGGTTCAAGGTTGTGAGATGCAGTGAGGGAAAGACGCTGGAGTGACCCCTGGAGTATGCGAGTACCTGTTTGACCTAGGGAGCTTGTACCCAGGAGCAGTGTGGGTTCCATCCGAAGATGGGGCAAGGCCTAATACAGATCCCTCTAACCTGGGTGTGCGTGACCACACCCTCCAGGGCAGGTTCCACCATTCTTCAAACTGGGCCATTCCAGCTTTGTCAGAGTCGTCCCTGGTGACTCAGAGCTCTAAACAAGAGCCCCTTCTCCACAGAGTGAGTCACCTGTCAGAGCTCTGTTTGAGGAAATATAAACTTCAAAAGCCTAATTGGGCGAGACGCCCTTTCTTATAGATCTGAAGTTTATATGAGATGCTGCTGCCCTAAATTTCCATAGCAACCGAGGTTTGAGGCTTTTCCAGTGACTTGTTTTTAAGTGATGGCGCTATTGAAATAGTCAAGATGGCCAGAGAGGGACCCGGCTGGTTGATTCAGTGGGCCCTTTATCAATTGAAGGTAATGATTTCGTTGTCGTAAGTAACTAGAGCTGTCTCTCCTGTGACCAGTCACAAACCACCAAGCCCAGAGCATTCCTTACAGGCGTCTCTGTAGCCATTCAGATGCCGTCCAAGCCTCAAACATGTTCTAAGTACATTCAGGTCACCACTGAAACAGCCACTTGCAATTGCTGGACCAGACAGTGCAGCCGCAGAATGTTCCCACCATCACAGAAAGTTCTAGAGGGCTCTCTGGCCACTGCCCAGATCACCTCACCAACACAGCTCCGTGACTTGCATTGAATTTTGTTACGTCTGAGATCTAAAAACAACACAAAACAAAAACCTCAGGGCTGGGAAAGATGAGCCCAGAGGTGAAAATGTTTATAAGCCCAAGCCTGAGACCTTAAATTTCTAGAATCCATTTAAAAGCGCAGCAGCAGGCAGGGGTGTATTTAAGCCTAGCACCACGTCGGGAGACATAGTATGCAATGGGAGACAACCGAGAGACCGTGTCTCAAGCAAAGTAACAAAGATTGTCCTCTGACCTACACACACACACACACAAACACACACACATATATACACAAACACAGACTCACACACACACACACACACACACACACACGGAAACAAGTATCAGCGTCACCAAGATGGCTCACGGGGGACAGGGGTGCTTGCTGCTAAACCTGATGATGGCCTTGAGTTCCATCATTTCGGAGACCCATGTGGTTGAAAGGTGGAGCTGACGCCCACAGATTGTAGAATGAATAAAAACTGTAAAGACAGATTTTCCTCCACACTCAATGCCTAACTAGAATGAGTAGAAAACTAGACAGTGATGTTTTCAAATAGCGTGCATGGGAGAGGGAAGCCACCTCAGCTGCCATCAAACTGAGGGAGCCGCTGCTCCCGCTGGCCTGCAGGACCGTGCTTGGCTTGGTGACAGGAACATTGCCCATCCTCTTCCCCTCCTGCTCACAGACCCATCACACGCACCCAGGGCGTCTCAGGATGGAGCTCTGATCGCCACCTGGCCCAAGAGGCAGGCTATGTGCTGACTCATGCGCTTCCCGTCCACCGGCTTCTCACAACCAGCCTAGAAGCCTCTGTCACGAGCCCCCAAGTAAGCGGCTTGGCAAATCCAGCCGGATTCCAGAATCACATTCTCTGGGCCCCCTCTCTTCTCGCCCCCAAGTCAGTCTCCCTCTTGTTTGAAAAGAATTGAGGTTTTCAAGTAAAATCTCTTCTTGTAAATTTCCTGGCTTTCTCTGGGTCCGTTGAATACATTTCATTCTTTATGAAAAAAAAAAAAAAACAAAAAACAAAAAAAAAACAGCCTCGCTTAAGGAAAAACTCTTGCTGCAAGTGAAGCCAAGGAGGCGGTCCTTGGAGGAGGACCAGCTCCTGAGATCGACTAAAAGCAAAGAGGCAAGAGTGAGCTGGGATCTTAAAAGGGAGTCCTGGCCAGGTGTGGGGACTCACGCCTGCAACCCGGGCGCCCAGGAGCCTCAGTCTGAAGGGCCGCTTCAAACAGCAGGTACTTGGGCCAGGGCTGGAGAAATGGCTCAGTAGTTAGGAGAGTGCGGAGGACCCCGTTCCATTACATCTTGTAGCTCATGACCACCAGTAATTCATCCCAGTGAATCTAACGCCCTCTTCTGGTCTCTATGAGCACTGATCCCACAGGTGTGCGTGCACATGCGCACGCGCGCGCACACATACACACAGAGAGAGAGACACACACACAATTTTAAAATAAAATCTTTTAAAATTGGGGAGTGGGAATCAGGAACTAGATGTGGCGGTTCACAGCCATAATTTCAGTACCTGAAACACTAAGGCAGGGGGATTGTTGTGAGTTTGAGACCGTCGCCTGGAAAGTAAAATGCTTGCCTAGGACACATAGGCCCCAGATTCAACCCTGCAGGAAAGGGGTCAGGGTGTGTCACCACACGCTCTGACAGTAGAAGCAGGGGAGGGTGGCTTTGTGCACCAGGGGAAGTAATTCTGGAGCCCCAGAGACAGTAAGGGACAAATCACACTGGAGTCACAACAGAAGGGGATCTTTCTAAGTGTACTTTTTGCTCACATCCACAATGGAAAGTGATAGCCTGTCTGTCGCTTCACAGGGGCAGGAGCCCCGAATGCCTCAGCAGTGAGAGGAGAGACCATTAGGAACGCTTCAACTCAGGGAAGAGCAGAAACTTAGGCACATTACTGACAGGGACCGGATGACATTACTGAAGCACTGCTTCCTACGCTTCTATACTGGGTGGGAATGGTCAGAGAATGCAAACACACCAGTCTCTAAACACCTACGGGTCCCCTTCCGGGTCAGACCCATTTCTTTCATTTCTCCTCCTGCGGTGTGGTTGCACCTGGCCTTCCCTGTGGTGCTCTGGCCCTTGCACGGGACGCGCCCCTCGGTGGTTTGTGGGACTTCTGCCCCAGGTCTGCACATTGTTCAGTTTTGCATCTCAGCTGGTGCAGCGAGGAAGCGTAGCTGGCTCTGCGGGTCTGCAGGCTTGGTCTGCCCCCTCCTGCCCAGGAGCATCTCAAGGCTTTCTGGAGTCTCACTTATGTTTGTGTCTGCAG
Seq C2 exon
GGTGTCACCCCGGAAGACTTCAGCAACTTCCCGCCTGAGCAGAGAAGGAAAAAACTACAACAGAAAGTGGACGATCTCAATAAAGAGATCCAAAAGGAGACCGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258:ENSRNOT00000011224:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.930
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF143891=Lzipper-MIP1=PU(33.7=73.7),PF154561=Uds1=PU(30.4=63.2),PF0218511=HR1=PU(25.8=42.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]