BtaINT0063339 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100303724-100307708:-
Coord C1 exon
chr11:100307694-100307708
Coord A exon
chr11:100303834-100307693
Coord C2 exon
chr11:100303724-100303833
Length
3860 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
ATTTCTGTTTGTATCTGCAGGGC
3' ss Score
10.55
Exon sequences
Seq C1 exon
CTTTCTCTCAAGCTG
Seq A exon
GTAAGCACAATTACCCCATGCATGTCCTGAATCTACTCAGGCCTTTCGGTGTACATTCTGTGGGTGCTGTGCCGCGTGCAACCTATCTTCACAGTTAACTGTCGATGTGTGTTTCCCTTGTGTGTGGCTTTGTTGGTGTTTCCTTATTAGATCTCTGGAATACGAAGGTCCAGAGTCTAACAGAGGTGATCGTAATCTTTCCCCATTAAGAAAATTAACGCTTAACTCATGATTTGGTTTTCTTTACCACTGGAGTCTTAAGAGGATGACAGATGACAGATGTTGATAAGCTTTATTTAAATATGAACATAAACATAAATACTAAATATGAGGAAGTTTATGTATCGAATCATTCTAAATGAAAGCAAATTGAATAGCTGAAAGTTGCTCCTCTCCAGGAGCCACAGAAGCAGATGACAATCACTGGGGACCTGAGGAAGGCATGCAGGAATGATGCTGGGCTCAGACTCAGGTCTAAGGCACCTTCGAGAATTGAAGGTCATGAAACTTTTAAGTTGCTCCGTAAATACATTGGTGCCTTGTGCGTAGCTGATTCAAGAAATCAAAGACAATTTTATGGACAATGAAAAGAGCCTCCTAAGCCTTTCTAAAATGATTTCTTTAGTGTTCGGTGTTTTCTACTTTTAATTTCATAGCCCTAGTAAATAGTCAAACTAATCATTAAATCTATTAAAAGAAACCCTTAACCACATAACCCATACTGTTCTTCAGATATGTGTAAGTTATATAATAAGCTCAAACACCACAGCTGAGAGTATCCTGAAGTCATGGACAGGATGAACTTGACAGTCCGACCAGGAATAACATCAGCATTTTACGCACTGTTATTGAGAATATAGGACAGTATTTATGGTTATCTTTGTAGGTATGTACTATTACATGTGCTTGAGTATATATAAAAGTATATACATAATTTTTTCGACCTGACCTGATATTTGACAACTGATCCAGCCCTAAAGAGAAAGAATTTTTTATTAAATGGAACATTTCTTAGAGGGTAAAATAAAATCCTGAGAAGAGTTCTCGATTAAGGTGTCTACAAGAAGGAAAGATCTAGATGTTTAAATGAACATCAGTATGAATTTGGGAGACAGTGGGTCAATTAACTGGGAATCTGTCAGATGCCAGGGCTTCTTTTTCGCCCTTTATTTGTTCTTTTGCTGAGGTGCTGGCGGCAAAAGATAATATTATCAGACAGTCTTTCTGTTTGAGATATTGTTGCTTGATACCCTCACTTTGAAGCTGATAAAGAAGTTACACAAAGATAGGGTGGGTGTAAAAATTATAAATCTCAAGAAGCAGCTCATGTCAAGCGAGCAAGTGTTTGATTCCGATAGCAAGTAAAACAAGATCTCCTTAGAGTCACAGCCATTGAAAATATACATACGTGCCTGCGGCCTGTCTTCCAAACCCTGGTAGGGCCAGTCTCTTTGAGGCCCCTCCAAAGAGTTCAGAAAATCTACTCCAACTCGAAGGCAGAAATAAAAATTCTTTCATGGCAAAATAAATCATAGGTTAGAGTATTGTTTGAAAGAATTCAAGCTTCAAAAGGTGAATACGACAAAGTGAACTTTTGAAGGTACTGTCCAGAGACCTGAGTGTCTTTGGATCTAGAGGAACTGTTGACCTGAATCTCCCATGTAACTAAAATGTTTAAATTTAGTTCCATAATTGCACTGGGCACATTTCAAGGGCTCAGCGGCCACGTGCGGCTACCAGATCGGATGGTGTGGACGTGTGAAAACATTTCCATCATTGTAGAAAGGTCTTTGGGTCTCACAGCACATAGTGAGGCTCAGAGCATCTGAATGAATGAACGTCGACCACTTACTAGCTTTCCTGCCTTCGGAAGCAGTGCGTCTTCCACTGTTTTGTCACAGTCTAGCATTAAAACACGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTACCTGGAAAATCCCATGGATGGAGGAGCCTAGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGGCACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTTGGACACAACTGAAGTGACTTAGCAGCAGCAGCAGCAGCATTAAAACAAAAATGAAAATAAAATCTCCAGTTCCAGAAAACATGCTGATTTAAGTCAATTCAGCATAAGAACAAACTATTGAGCTTTTGGGCTCAGTGACTGAGTTGAGAAAATTGGAAAGCAATTGAGGTTTCAAGTATTATATGGAAAAGGAAAAACAAGCCTGTTTTATTATTATATTGAAGATTAGTTGGCTTCATCTTAGCTTTAGAAGCAAGTCGAGCTTTCTTGGGTTGGCATTAGGGAATAATCACTTCTATTTTGCTTTCACTCAGATCTCGTCCCACTCAAACACGTGCACGAGCCCGCGCGTGCACACACAGTTTTTGAGAATATTAGCTGAAAGGTCTTTGGTGGCCTCAGTGGTGAACTATTTGCTGAATCACAAACTTCCAACCCAGAAGCCTGGCATTTTCTAATAAGCAGCCTAGGAACTTCAGTCACAAGCCCCTGTGTAAGCTGCTTGGCAAACTCAAGCTGATTTTGCAATTACATTATCCAGGTCCCTTCTTTTCCATCCACTCCCAAGCAAGTCTGTCTTGCCTTTTTTTTTTTTTTTTTAAGGGATTCTAAAGCAAAATCTCTTTTCAAATTCCCTGGCTTATCCCTGGCTATTGAGCGAATTTCTTTCTTTATGAAAATAGCCTCATTTAAGGAAATGATGCGTAAGCGTGGGTAAAAGTCTGGCAACTCACAGTTGATATTTTCTACTTATAACATATACACAGAGGAAAGAGAGCAGTTGTTTTTGAAAGGGAATCAAGATATCAAAGTATACTTCTTCCAAGACTTCCCTGGCGGTCCAGTGGTTAAGACTCTGCCTTCCAATGCAGGGGGCGTGGGTGCGATCCCTGGTCAGGACACTAAGATCCCACATGCCGTGTAGTACAGCAAAAAAACAAAGTGTAGTTCTTCCGATGAGTTAGAAACAGCTGAGGTTGATTTCAGACATTATGGAAAAGTTGGTTTTGAAACTGGGGGAGTGGGGGCGGGGGTGATTCTCTGCAAATTCTCTGAGATGCTCCTAAAGGTGACAAAAAAGACGTGACGGGACTTTTAGAGGAAGCAGAGGCAAGGAGAGTGGATGGGAGCTGGGGGAGGGTTTTTTCCCTTAATGTCCTTTTCACCCACATTCCTGGAGGAACTAGATGTCCCATCTGCCACTTCACAGGGGTGGAAACTTTTGGCCTCAGGCTCTATGCAGAGACGGGAAGGAATACTCAGCCGGGGTGGGGGTGGGGTGGGGAACAGTGCCATCGACATGAAACAGTTGATGGGGGCACTTACCAGTTTTTTTATTGGAAGAAAACATAAGCCTAAAGCTTCAGTGTTGCCATCGACACTGACAGCGAAGTGCAGACTGTCTCCAGACTAGTTCCTCACTGATTCTCGATGGGGTCAGAAGTATGTCTTCCTGTCTCAGGGGTCCCTTCCTTGTCGGAGGCTGCGGGGCCAGCATGGAAAACGGTTTGCGGGGCCTTTGCAGTTTGCATGCACGGATTTTTGCATCTCAGCTGGGTGTCGTGGGAAAGAGCTTAATTTATTTCATGAAAACACACGCAGACATCTGCATCGCCCTGGTGTCTGGGGAATCTCCCTGCAGGCTTCTCTCGGTGTCTTTTTTTCAAGGAGGCTTTCTGGCTAATTTCTGTTTGTATCTGCAG
Seq C2 exon
GGCGCGACACCAGAAGATTTCAGCAACCTCCCACCCGAACAGAGAAGGAAAAAGCTCCAGCAGAAAGTCGATGAATTAAATAAAGAAATCCAAAAGGAAATGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313:ENSBTAT00000027072:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.928
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(24.2=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development