BtaEX0014839 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100303724-100314811:-
Coord C1 exon
chr11:100314614-100314811
Coord A exon
chr11:100307694-100307708
Coord C2 exon
chr11:100303724-100303833
Length
15 bp
Sequences
Splice sites
3' ss Seq
CCTTCGATTTTTACGTGAAGCTT
3' ss Score
3.82
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GATTCACAGCTGGTCGTAGAAGCTTATAAGTCTGGGTTCGAGCCTCCAGGAGACATTGAATTTGAGGATTACACTCAGCCTATGAAACGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAATCAGAGCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCATTCATCAAAAAAAATAAG
Seq A exon
CTTTCTCTCAAGCTG
Seq C2 exon
GGCGCGACACCAGAAGATTTCAGCAACCTCCCACCCGAACAGAGAAGGAAAAAGCTCCAGCAGAAAGTCGATGAATTAAATAAAGAAATCCAAAAGGAAATGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.067 C2=0.928
Domain overlap (PFAM):
C1:
PF078236=CPDase=PD(1.3=3.0)
A:
NO
C2:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(24.2=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGGCAAATCAGAGCTCA
R:
GGGTGGGAGGTTGCTGAAATC
Band lengths:
111-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development