RnoEX0036520 @ rn6
Exon Skipping
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9885986-9888655:-
Coord C1 exon
chr3:9888509-9888655
Coord A exon
chr3:9887068-9887262
Coord C2 exon
chr3:9885986-9886168
Length
195 bp
Sequences
Splice sites
3' ss Seq
GTCCATGGGTGTTATTGCAGGAC
3' ss Score
5.28
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAATCCAAGAGATGGAGGAGAGGAGGATTGTGCGCATTGGAGAGTCCATGAAGACGTATGCAGAGGTGGACCGGCAGGTGATACCCATCATCGGGAAGTGCCTGGACGGTATAGTGAAGGCGGCCGAGTCTATTGACCAGAAAAAC
Seq A exon
GACTCCCAGCTAGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCCGGAGACATTGAATTCGAAGATTACACACAGCCCATGAAACGCACGGTGTCAGACAACAGCCTTTCCAGTTCCAAAGAAGGCAAGCCCGAGCTCAAGTTTGGAGGCAAGTCCAGAGGCAAGCTCTGGCCGTTCATCAAGAAAAACAAG
Seq C2 exon
CTTATGACCCTTTTAACATCCCCCCACCAGCCTCCCCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258_MULTIEX1-1/3=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.565 C2=0.711
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGGATTGTGCGCATTG
R:
GAGGGGTTCCTTTTGCTGCTT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]