DreEX6083064 @ danRer10
Exon Skipping
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6232615-6268459:+
Coord C1 exon
chr21:6232615-6232761
Coord A exon
chr21:6235724-6235918
Coord C2 exon
chr21:6268350-6268459
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTGTTTTGGTGCAGGAC
3' ss Score
10.29
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AAAATCCAGGCGATGGAAGAGAAGAGAATAGAGCGGATGGGTGAGTCTCTGAAGACGTTTGCGGAGGTGGACCGACAGATTCTGCCCATCATTGGGAAATGTCTGGATGGAATGACACAAGCAGCCGAGTCCATTGAATCCAAGACT
Seq A exon
GACTCATCTCAGGTCATTGAGTCGTATAAGTCCGGCTTCGAGCCTCCCGGCGATGTGGAGTTCGAGGACTACGGTCAGGCCATGAAGAGGACGGTTTCTGAGACCAGCCTGACCAACTCACGCTCAGAAAACAAACCTGAACGCTCCAGCAAGAGCAAGAGCAAAACCCTCTGGCCTTTTATTAAGAAAAACAAG
Seq C2 exon
GGTTCCAATCCTGAGGACTTCAGTCATCTTCCTCCAGAGCAGAGACGGAAGAAGCTGCAGGCCAAGATTGACGACATCAATAAAGACATACAGAAAGAGATGGATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028-'8-18,'8-9,9-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.840 C2=0.996
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(23.2=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCGATGGAAGAGAAGAGA
R:
TCTGATCCATCTCTTTCTGTATGTCT
Band lengths:
250-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]