BtaEX0014836 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100313477-100316941:-
Coord C1 exon
chr11:100316795-100316941
Coord A exon
chr11:100314614-100314811
Coord C2 exon
chr11:100313477-100313659
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGTGATGGGTATCATTGCAGGAT
3' ss Score
6.46
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAATACAAGAGATGGAGGAGAGGAGGATAGTAAGAATTGGAGAATCAGTGAAGACATACGCAGAGCTGGACCGGCAGGTGATTCCCATCATTGGGAAATGCTTGGATGGAATCGTAAAGGCAGCCGAGTCAATTGATCCGAAAAAT
Seq A exon
GATTCACAGCTGGTCGTAGAAGCTTATAAGTCTGGGTTCGAGCCTCCAGGAGACATTGAATTTGAGGATTACACTCAGCCTATGAAACGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAATCAGAGCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCATTCATCAAAAAAAATAAG
Seq C2 exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCACCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGTCTAAAGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313-'10-14,'10-13,11-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.636 C2=0.710
Domain overlap (PFAM):
C1:
PF078236=CPDase=FE(30.4=100)
A:
PF078236=CPDase=PD(1.3=3.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGGTGATTCCCATCATT
R:
CCTGAAGCAGTGGATTTTGGGT
Band lengths:
243-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development