GgaEX6015181 @ galGal3
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
NA
Coordinates
chr17:6317240-6323355:-
Coord C1 exon
chr17:6323209-6323355
Coord A exon
chr17:6318794-6318991
Coord C2 exon
chr17:6317240-6317422
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTTGATCTGTCCCATTTCAGGAT
3' ss Score
10.72
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAATACAAGAGATGGAGGAAAGAAGAATTGTGAGGATAGGTGAATCCATGAAAACTTTTGCAGACGTTGACCGCCAAGTGATCCCTATCATTGGAAAGTGTCTGGATGAAATAACAAAGGCTGCAGAATCAGTTGATCACAAGAAT
Seq A exon
GATTCACAAATGGTAATAGAAGCCTTTAAATCAGGGTTTGAGCCTCCAGGAGATGTTGACTTTGAGGACTTCACTCAGCCCATGAAGCGGACTGTCTCCGAATCCAGCCTTTCCAACTCCAGAGGGGATGGGAAGTATGAGCCGAAGTTTGGTGGCAAATCCAAGGGCAAGTTATGGCCATTCATCAAGAAAAATAAG
Seq C2 exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCCCCTCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-'13-13,'13-11,15-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.652 C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF122293=PG_binding_4=PU(15.2=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCCAAGTGATCCCTATCA
R:
CCTGAAGCAGTGGATTTTGGGT
Band lengths:
245-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]