HsaEX6092336 @ hg19
Exon Skipping
Gene
ENSG00000125733 | TRIP10
Description
thyroid hormone receptor interactor 10 [Source:HGNC Symbol;Acc:12304]
Coordinates
chr19:6744565-6746572:+
Coord C1 exon
chr19:6744565-6744711
Coord A exon
chr19:6744811-6745005
Coord C2 exon
chr19:6746463-6746572
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCACTGTCCCCCTCCCCCAGGAC
3' ss Score
11.54
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
AAGCTCCAAGACATGGATGAACGCAGGGCCACCCGCCTGGGTGCCGGGTATGGGCTCCTGTCGGAGGCCGAGCTGGAGGTGGTGCCCATAATAGCCAAGTGCTTGGAGGGCATGAAGGTGGCTGCAAATGCTGTGGATCCCAAGAAC
Seq A exon
GACTCCCACGTCCTTATAGAGCTGCACAAGTCAGGTTTTGCCCGCCCGGGCGACGTGGAATTCGAGGACTTCAGCCAGCCCATGAACCGTGCACCCTCCGACAGCAGTCTGGGCACCCCCTCGGATGGACGGCCTGAACTCCGAGGCCCGGGTCGCAGCCGCACCAAGCGCTGGCCTTTTGGCAAGAAGAACAAG
Seq C2 exon
ACAGTGGTGACCGAGGATTTTAGCCACTTGCCCCCAGAGCAGCAGCGAAAACGGCTTCAACAGCAGTTGGAAGAACGCAGTCGTGAACTTCAGAAGGAGGTTGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125733-'12-16,'12-13,13-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.815 C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF143891=Lzipper-MIP1=PU(34.5=78.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACATGGATGAACGCAGGG
R:
TCTGGTCAACCTCCTTCTGAAGT
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)