DreEX6019111 @ danRer10
Exon Skipping
Gene
ENSDARG00000005679 | trip10a
Description
thyroid hormone receptor interactor 10a [Source:ZFIN;Acc:ZDB-GENE-041114-105]
Coordinates
chr3:54192711-54201015:-
Coord C1 exon
chr3:54200869-54201015
Coord A exon
chr3:54200364-54200552
Coord C2 exon
chr3:54192711-54192715
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTATGTTATTCAGGAC
3' ss Score
8.87
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAGTTGCAGGACATGGATGAAAGGCGTATTAAGAAGATGGCACAGGGCTACATCCTGTTTGCCGAAACGGAGCGTCACGTCATGCCCATCATCGGGAAATGCTTAGAGGGCATGACCAGAGCTGGCACGAATGTCAACGCGAGGAAT
Seq A exon
GACTCTATGGTTCTCATAGAGCAACATAAGTCTGGTTTTGAGAGACCGGGAGATCTGGACTTTGAGGACTACAGTCAGGGCATCAACCGGGCCTCATCAGACAGCAGTCTAGGCACTCCGAAAGGACCCTTAGAGCTGTTGGGCAAGAACAAGAATAAAACATTCCGGTTGTTCAATAAAAAGAGCAAG
Seq C2 exon
TTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005679-'7-14,'7-10,8-14=AN
Average complexity
A_C3
Mappability confidence:
36%=100=57%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.604 C2=0.500
Domain overlap (PFAM):
C1:
PF086796=DsrD=PD(40.8=40.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]