GgaEX1025322 @ galGal4
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12817870-12826348:-
Coord C1 exon
chr8:12826202-12826348
Coord A exon
chr8:12825375-12825578
Coord C2 exon
chr8:12817870-12817979
Length
204 bp
Sequences
Splice sites
3' ss Seq
CTCACTCATGTCCTGTTTAGGAC
3' ss Score
9.53
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CAACTTCAAGAAATGGATGAAAGAAGGACTATCAAACTTAGTGAATGTTACAAAGGCTTTGCTGACTCTGAGCGCAAGGTTATTCCAATCATCTCTAAATGCTTAGAGGGGATGATCCTTGCAGCAAAATCAGTTGATGAACATAGA
Seq A exon
GACTCCCAGCTAGTGATAGACTGCTTCAAATCTGGTTTTGAACCTCCTGGAGATTTTCCATTTGAAGACTACAGTCAGAATATTTACCGGACTATCTCTGATGGAACCATCAGTACACCAAAGCAGGAAGGAATGAGAATTGATTCAAAAACTACAGTGGGCAAGGCGAAAGGAAAGCTGTGGCTATTCGGAAAAAAGCCAAAG
Seq C2 exon
GGCCCTGCACTGGAAGACTTCAGCCACCTTCCTCCAGAACAAAGACGCAAGAAACTTCAGCAGAGAATTGATGAACTCAACAGAGAACTACAGAAGGAAACTGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF103924=COG5=PU(35.9=89.2),PF154561=Uds1=PU(35.2=86.5),PF143891=Lzipper-MIP1=PU(33.3=78.4),PF0218511=HR1=PU(25.8=43.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAAGAAATGGATGAAAGAAGGA
R:
TGGTCAGTTTCCTTCTGTAGTTCT
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]