DreEX6048929 @ danRer10
Exon Skipping
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15025525-15029186:+
Coord C1 exon
chr8:15025525-15025671
Coord A exon
chr8:15028441-15028644
Coord C2 exon
chr8:15029034-15029186
Length
204 bp
Sequences
Splice sites
3' ss Seq
ATACTATTGTCTTTGAACAGGAT
3' ss Score
9.01
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AATCTTCAGAACATGGATGAACGGCGAACTGTGAAACTCGGTGAGATGTACCGGAGTTTTGCTGAGGTTGAGCGAAGAGTCATTCCAATTGTCTCAAAATGCCTGGAAGGCATGGTTACTGCTGCTAAAAATGTGGACGAGCGAAGG
Seq A exon
GATTCTGGGATTGTAGTGGAGTCATTCAAGTCGGGTTTTGAACCCCCTGGTGATTTCCCTTTTGAAGACTTCAGTCAGAACATCCAGCGAACAGGGTCAGACAGCACCATTGGGACCCCCAAAACAGAGGGAGGCAAACCAGACCCCAAACACGCAATCAGCAGGACCAAAAACAAACTCTGGCTCTTTGGAAAGAAACCCAAG
Seq C2 exon
CTTCCCCCATCCATCCCACCTCCTTCCCGCCCGAGTTTTCCCTCTAGCCATTTCCAGACTCCTAAATTTCCTTCAGAGCGGAAAGCTAACCATCTATCTGAAATGAGAAATGCAAAATCTAAGATCACGACCTTCCGAGCTGTGAGAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131-'14-11,'14-10,15-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=0.691 C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
PF039618=DUF342=PU(3.4=5.9)
C2:
PF039618=DUF342=PU(6.3=15.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAACATGGATGAACGGCG
R:
TCTTCTCACAGCTCGGAAGGT
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]