GgaEX1025322 @ galGal3
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14568193-14576671:-
Coord C1 exon
chr8:14576525-14576671
Coord A exon
chr8:14575698-14575901
Coord C2 exon
chr8:14568193-14568302
Length
204 bp
Sequences
Splice sites
3' ss Seq
CTCACTCATGTCCTGTTTAGGAC
3' ss Score
9.53
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CAACTTCAAGAAATGGATGAAAGAAGGACTATCAAACTTAGTGAATGTTACAAAGGCTTTGCTGACTCTGAGCGCAAGGTTATTCCAATCATCTCTAAATGCTTAGAGGGGATGATCCTTGCAGCAAAATCAGTTGATGAACATAGA
Seq A exon
GACTCCCAGCTAGTGATAGACTGCTTCAAATCTGGTTTTGAACCTCCTGGAGATTTTCCATTTGAAGACTACAGTCAGAATATTTACCGGACTATCTCTGATGGAACCATCAGTACACCAAAGCAGGAAGGAATGAGAATTGATTCAAAAACTACAGTGGGCAAGGCGAAAGGAAAGCTGTGGCTATTCGGAAAAAAGCCAAAG
Seq C2 exon
GGCCCTGCACTGGAAGACTTCAGCCACCTTCCTCCAGAACAAAGACGCAAGAAACTTCAGCAGAGAATTGATGAACTCAACAGAGAACTACAGAAGGAAACTGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'13-21,'13-17,14-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF103924=COG5=PU(35.2=86.5),PF143891=Lzipper-MIP1=PU(33.3=78.4),PF154561=Uds1=PU(34.8=86.5),PF0218511=HR1=PU(25.8=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAAGAAATGGATGAAAGAAGGA
R:
TGGTCAGTTTCCTTCTGTAGTTCT
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]