BtaEX6016551 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50097517-50108968:-
Coord C1 exon
chr3:50108822-50108968
Coord A exon
chr3:50106432-50106635
Coord C2 exon
chr3:50097517-50097626
Length
204 bp
Sequences
Splice sites
3' ss Seq
GGTACTGTTCTTACATGTAGGAC
3' ss Score
6.62
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CAACTGCAAGAAATGGATGAACGAAGGACTATTAAACTTAGTGAGTGTTACAGAGGATTTGCAGACTCAGAACGGAAAGTTATTCCTATCATTTCAAAGTGTTTGGAAGGAATGATTCTTGCAGCAAAATCAGTTGACGAAAGAAGA
Seq A exon
GACTCTCAGATGGTAGTAGACTCCTTTAAGTCTGGATTTGAACCTCCCGGAGACTTTCCATTTGAAGATTACAGTCAGCATATTTATAGAACCATTTCTGATGGGACTATCAGTGCATCCAAACAAGAAAGTGGAAAGGTGGATGCCAAAACCACAGTAGGAAAGGCCAAGGGCAAGTTGTGGCTCTTTGGAAAGAAGCCAAAG
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATCTGCCACCAGAACAGAGACGTAAAAAACTGCAGCAGCGCATTGATGAACTTAACAGAGAACTACAGAAAGAATCAGATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383-'13-22,'13-18,14-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.255 C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF103924=COG5=FE(36.4=100),PF127872=EcsC=FE(32.1=100),PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(25.0=43.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAGAAATGGATGAACGA
R:
TGATCTGATTCTTTCTGTAGTTCTCT
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]