RnoEX0036528 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226698916-226708913:-
Coord C1 exon
chr2:226708767-226708913
Coord A exon
chr2:226707574-226707777
Coord C2 exon
chr2:226698916-226699025
Length
204 bp
Sequences
Splice sites
3' ss Seq
AAGTTGTTTCTTATGTACAGGAC
3' ss Score
5.66
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTGCAGACTCAGAACGCAAAGTTATCCCCATCATCTCGAAATGTCTAGAAGGAATGATTCTTGCAGCAAAATCAGTTGATGAGAGAAGA
Seq A exon
GACTCTCAAATGGTAGTAGACTCGTTCAAGTCTGGCTTTGAACCCCCAGGAGACTTTCCATTTGAAGATTATAGTCAGCACATTTACAGGACCGTTTCTGATGGGACCATCAGTGCCTCCAAACAGGAGGGTGGCAAGATGGATTCCAAGTCCACAGCAGGGAAGGCCAAGGGCAAACTGTGGCTCTTTGGAAAGAAGCCAAAG
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATTTGCCACCAGAGCAGAGGCGTAAGAAGTTACAGCAACGGATTGATGAGCTTAACCGAGGGCTGCAGAAAGAATCAGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'17-17,'17-13,18-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.373 C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(25.0=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAAGAAATGGATGAACGAAGGA
R:
TGGTCTGATTCTTTCTGCAGCC
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]