MmuEX6073850 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122252074-122262084:-
Coord C1 exon
chr3:122261938-122262084
Coord A exon
chr3:122260821-122261024
Coord C2 exon
chr3:122252074-122252183
Length
204 bp
Sequences
Splice sites
3' ss Seq
AAATTGTTTCTTATGTATAGGAT
3' ss Score
6.35
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTGCAGACTCAGAACGCAAAGTTATTCCTATCATCTCAAAATGTTTAGAAGGAATGATTCTTGCAGCAAAATCAGTTGATGAAAGAAGA
Seq A exon
GATTCTCAAATGGTAGTAGACTCCTTCAAGTCTGGCTTTGAACCTCCAGGAGACTTTCCATTTGAAGATTACAGTCAGCACATTTACAGAACCATTTCTGACGGGACCATCAGTGCAGCCAAACAGGAGAGTGGCAAGATGGATTCCAAGTCCACAGTGGGGAAGGCCAAGGGCAAGCTGTGGCTCTTTGGAAAGAAGCCAAAG
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATTTGCCACCAGAGCAGAGGCGGAAGAAGTTACAGCAGCGCATTGACGAGCTTAACCGAGGGCTGCAGAAGGAAGCAGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'14-19,'14-15,16-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.279 C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF143891=Lzipper-MIP1=PU(34.1=78.4),PF154561=Uds1=PU(36.8=86.5),PF0218511=HR1=PU(25.0=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAATGGATGAACGAAGGACA
R:
TTTTGGTCTGCTTCCTTCTGCA
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: