RnoINT0061831 @ rn6
Intron Retention
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9878072-9887262:-
Coord C1 exon
chr3:9887068-9887262
Coord A exon
chr3:9878087-9887067
Coord C2 exon
chr3:9878072-9878086
Length
8981 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTCTTCAATTTTCCGTGAAGCTT
3' ss Score
5.26
Exon sequences
Seq C1 exon
GACTCCCAGCTAGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCCGGAGACATTGAATTCGAAGATTACACACAGCCCATGAAACGCACGGTGTCAGACAACAGCCTTTCCAGTTCCAAAGAAGGCAAGCCCGAGCTCAAGTTTGGAGGCAAGTCCAGAGGCAAGCTCTGGCCGTTCATCAAGAAAAACAAG
Seq A exon
GTACTGGCCGTTTGGACCCCGTGCGGGCTGAGAACCACAAGGTGCAGAGGCTTGGAGTTTATCTTTTGGTCTTAATCAAGCTAAGATCTAAACTTTGAGAAAGCGAGAGAGGACAGTTAGCGTGCTGCGTTCATTTCACGGTTCAAACGGTCTCTCTCTGGTGTTGGAGTCTTTGCCATGGCCTCTGTCTTATTACAGATGCGTTGTCCCAGGACTGTCACCCACACTAACATCACTGACCTCACGGCCCTCTCACCCACCCCCATCCTCCCAGACTGCTGGGCACCACTGCTGGGAGCAAGGGGATCATGTCCCATCTAATCAAGCTTGCCGGCCTGGCCTAGGTTTTGACACGTTAACCTCTGTCTCCGTGAACATTTTTCCGTTTTCTTTTCATAGCGTGGTATGTAGGTGCATGACAGCTAATCTAGCAGTCTAAACCGGACGGAAGTGGCCTTACTGCATTAACCGTAGAACAGACTGATTGTCTGAGTTTCCCAGGACAGGACTGTCCCCCTGTTTTTCCAAAACCTCAGTGATTTAGACCCTCTTTTGCCCCATCGAGCTGTGTTAGTTTAGGTGTGGAAATGTTTACCCCTCTGGCTTAAACTGGTTTTAGAACGACTAACGAGAGCCTTAGCTTGCATGTGGCCGTCTGCATGAGCTTTGGGTCATAATCTTCTGCTGTCCTATCGCGCGTACTCACGAACCCTCTCCTTTCCACCCCCTTCTCCGTGGACCGCATCCTCCATGATTTCTTTTGTACCGTGGCATCAATATTAATGGTTTGTGTTTTACTTGCTTTGGATCTTGAATATGATTTGATGCTTATTTCTGTTTTGTGTCTTCTTGTTTCTGATTTTTTTTTTCCGTCATCGTTCCGCCCCCCTCACATATAGCTTATGACCCTTTTAACATCCCCCCACCAGCCTCCCCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGGGTAAGTTCCGCTCTGGAATCCTGCGTCTCTCGCGCACTGTGTTGCCTGTCTCGTTCCGCATATTTTACTTTGTGAATGGACCCTGTGTGTTTCCCTATAACATTTAAAGGGAGAGAGGGCTTGAGCCCAGGCTCCCAGAGAGCCGTGTGGAGGGGTGTGAGGAGGAGAGAGCCAGTGGGCCTGAGGTCTTTTACTCTCAAATACATGCCGGAAGCACCCTTCAGAAGTCATTCCTTTTTCCCCTTGGCCTCACCAGCTCTGACTCTGTGAAGGTGAGGAAGTGGAAGTGACTGGACAGTCAGAAAATCTGTGCTGACTAATTACAGGCAGGGGCGCAACGTAGGTTCTGCTGTCCGAATGACGCCGCTGGTGAGGAGGAAGGAAGCTGGCCAGGCACACTGGTTCCCTTGCGAAGTTAAGGGGTGACAATAGAATACCTCTCAAATCTGCGTCTCTCTGCATAGGGAGAAGGTACAACGGGGGCAGCAGCATTCCTCAGCGGGCTTCCTGCTCCGTTCCGTCCCCTCCTTTCTTGGCGGTGAAGTGGCGTGCTAATAGAGTGTGGAGCTAGGACAGAAAACCAGAGTCCGCTCACACGGTCTGACACTCTGTGGCACCCAAGGTCAGGGAGCAGTCTCTCAGAATGTGGTTGCTGTCAGGACGCACGTCTGGAATCAGGTGTGACATTTCATGATCTGTCCTCCCAGCCTTCGGAGGGTCAGAAGTTCAGAGACATCCTTGGCTACATAGTCCCGAGCCATCCTGGGCTATATGAGATTCTGTCTCAAAACAAGCAGGCAGACAAAAGCCCTCTAGTTTGTAACCATACACGGAGCTCTATAGGAACTGGGCAGTCTTTCAGCATAGATACCAGCTCAGCTTAATAGGAGAGAGTTGGAATAAAGTAATTGGTAGCCTCCCAAGTGAGCCTTCTCTAGTCGTGTTCATAATAACTGTCTGGCTGAGTGTGGTGCCTCACGCCTGTAATCCTAACACTTGGGAGGCCGAGGCAAGAAAATGTTAAGTTTGAGGCTAGCTTCAGCTACATGTCCTTCTAGGCTAGCCTGGGATATAAAGTAAGACCCTACCTCAAACAAACAGACAAAAAGTCGGTAGCCGAATGGTCAGTGCCTCATCCACCTGCAGGTCCTGGCCTGTGGCGTTTCCCTGCGGATGTAGCTGGATGCCTTCCTCCTAGGATCTCCAAGCATCTGAGCGCTCAGACACTTCTTTCTTTCTTTCTTTTCTTTCTTTTTTTTTTTTTTTTTTTGGAGATGGTCTCTACATAACCCTGCCTGTCCTGGAACTCACTCTGTAGCCCAGGCTAGCCTAGAGCCTCCCTGGAGTGTTGAGATTAAAGTCATGTGCCACCATGGCCAGCTGGGGACACTTCAATATAGAGCTCAGTTATCTCTAAAGCCAGAATTGGTTTACCAGACCTTGGCTGATAAGCAGCATCCTTGCAAATGCAAAGTTCCCAAGTTTGTGTTTTCTACCCCACCATCCTCTGGCATGGGAAGGACTCCAAACCGTGGCTAATTAGATGAGCGTCTGCCTTAGCTCCACCCACTGGTGGATTTCTTTATTTGTGGAATCCCTGTACCAAGAGAGTCTTCATTCCATAGAAATAGTGTTCTGGTCTACATATAACCTCAGTACTCCAGAGGCAGGAGGATTGCAGTAAGTTTAAGACCAGCCTGGGCTTCATAGTGAGATAGTGAGATCCTGTTTTCAGAGAGAGAGAGAGAGAGAGACAGAGAGAGACAGAGACAGAGACAGAGAACAAAAGAAAGGAAGGAAGGAGGAAGGAAGGGAAGAAGAAGTAAGGGAGGAAGGAAGAAAGGAGGGAGGGAGGGGCCAGCCCAGAGTGTGGCTTAGCTTGGAGTGCTTGCCTAGCTTGCATCCTGAGCACAGCACAAATCATGCAATGGTTGGAGCCTGTGAAGATCAGAAAGTCAAAGGTCATCATTGGGTGCACAGCTAGTCTGAGGCCAGCCTGTGCTAAGCGAAATCCTATCTCGAAAAGAAAAGAAAAGAAGAGAAGAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAATGGGTCATAGAGATGGCCCAGTCTGTAAAAGTGCTTGAGGGAAGCCTCACCACCTGAGTTCAATTCCTAGGACACAAAGTGAAAGGAGAGAGCCAACTCTCCAGAGCAGCCCGCTGCCCTCTGCTCTCAGTAGATAAATGAATGAGCATACAAAAGGAAGAGTAGTGTCCAGAAAACCAAGGTTGAAGGAAGGAAGGGTACATTTGAGAGAATTGTTTTGCTTTGAAGGCTACTTAGTAGGTCAAGTTAGAAATCAAATTTGGGCTGGTAAGATGGCTCAGGGCCATCAATGATACAAGCCAACAATGAAACAGGCCCAACAATGAAAGTTCCGTCCCTGGGACCTACAAGGGGGAAGGGAAGAACCAACTCATGCAAGCAGCCCTGTGACCTCCACATGTACGCGCTCGCTCACACACACACACACACACACACACACACACACAAGTGCTGAATAAGTAAGTGTAATCATTTCTTAATTAAATCAGAAATTTAATTTCCTAAAGCTGTCAGGACCTAGCCACTGTCAGCAGGCAGAGTAGCTTCAGAAGTGGCCGATGGATCGTGCTGAGTTCTATTGTTGGGACTGGCTGAGCAATCGGCAGCTCCTTGGCTCAATTATGTTGGCTTTTAGAACTTCACTCTCCATCAGAGAAATTTCCACGGATGTAGCCAGGGTGAGCCAGGCTCAGAGCCAGTTCCATCCCGTTACCACGTGATCACTTGTTTATAAACATCTGCATCTGTCTGTCACACATGAGATGTGCTAAGTGTCTTCAGTTGCTATCCGTTTGCATGTGTGGTCCATGACGCCACATTCCACAGTCTCCCGGTCATCGATGGTTTCTGCGTCTGTGTTCTGGTGTCACCAAAGTGTGTTGGCCAAGGCCAAAGAGTGTGTGTTCGATTAGTACAAGGGGAAGAAAGGTCTTAAACATTTTGATTTTGGGAAATTTCTTTGATGGAAACTTTCCTGGAAGGTAAGTGCATTGTCCAGTGACAGACGAGCCAGAAACTTCGGCAGTAAGGGCCGTGGATAAGGCACACGGAGGTCGGTTATGTTGCCATCAGTTGTGAGAAGCAGTAGGGTCAAATCTGATGCTTCTTCCTGCAAGGAGCAGTGGGGGAAAGGAAGCTGAGGGAGGGAGGCAGGGAGGAACAGCAGGCCTTTGAAAAGAAAACATCCTAAACCCAATGTCTGGGGAACTAGACCCTAGCATCAGTGCGGGAGGTGTGGTGGCAGGTCCATGCCGGCCACAGGCATGGAACCCTCTCTCCCATTTCACTTTCCCCTGAACCTGAACTTGAGACTCGTGAGCAAGTGAGCTCTCTGCTACTCTCGGAGAATAACTGCCTGGGGCTGTGGTGTCTGTTTCATCCCATTCTGATTTTTTTTCATTTTACTTTTATCTGCGTGAGTGTTCCCTGCCGGTGTGTCTGGACCACATGTGTGTCCACTCCCCTCTGTACTGAAGAAGACATTGGATCCCCTGGGTCTGGAGTTACCAATGGTTGTGAGTCACCATGTGGGTGCCGGGAATCAAACCCAGATACTCTGCAAGAGCAGCATGTGCTCCTAACCATTGAGCCATCCCTCCAGTACCCCGTGGTGTGTCTTTTAATTTATCACATTTGACAGCCCTCAGATTTGAAGTATCTGGTTTAATGACCAGAGTGTGGAAATTGCATGCAAACATTTCTTTTTTTCTTTTCTTCCTTTCTTTTTTCTGAAATGGGGTCTCACTGTCTAGCCCTGGCTGTCCATGAACTCACTATGTAGACAGTCTTGCCTTGAACTCACAGAGACCTGCCCTCCCCTGCCTGCTGAGTGCTGGGGCTACAGGTTTGCACCATCACCACCTGGCTCAGTGTGCAAACGTTTCTTAGCATAGCTTAGTTTATTTGTAAATAGTTCAACGGGATTAAATGGTTCTGTGATATTTACAGAGGGCTGACACTGCCAGACCGCCATCGCTCCATCTTTATAAAAGTCAAATAAAGACTAGAGAGTGTGTCCTTAGCACGTGCCTATGATCCCAGGCCTGGGGAGGTGAGAACTGGAGGACCAGGAGATCCAGGTCATCTTCCCCGACACAGGGAGTTTGAGGGCAATGCAAGCTACGTGACAGGAAAGCCAAAGGGGCGTGAGAGAGGTAGAGATTGTTACGTGGATAGAGAGATACAGAGAGATAGAGATGGATAGATGATTGATAGATGGCAGATAGGTAGATGAGAGATGATGGATGGATAGGTAAATATATATATACACACAGACACATATATATATATATACACATATATATATATTTGATAGATTGATAGACAGACAGACAGAACGAACATGTCCTGAATTTGACTCTACAAAAGGTAATTTCTAGTGTCTAAAATGAGAATTTCCATTTGAGCCTATGCAAAGCAATTGTCTAGCTAAAACTAGCTGACTTCTCTCGTAGTTGAGAGTTAATCTTAGGGAAAAAAAAGCCCTAAAGCAGAGCGTGACGTTGTGAACGCCCACTGTTGCGTGCCATGTTACGAATGTGCGGTTCTCCTTTCTCGAGTGTCTTACCGTGTTCTCTTGCTGACTGTTGGCAGACTCAGTCTCTGTGTTATCACAAAGAGCTCATGAAGAGGACTCTAGGGAAACCCACGCATGCCTTGGAGGCTAGGAACTATGTTGTAAGTCCGCCGTGAGGCACTTAAGACAGTCACAGCCAAAGCTGTCCCCTGGACAGCGCCAAGACTGGGGACCCAGGTGCAGCTGTAACACTTCCACCTCAAACAAGACTCTCCGGGACAAGGGAGGGGTCTTACTGTGTAAATTCAAACAGCTGTTTTAGCTCCAAAGCTTGTGTAGAAAGATCAGAGCCCTCCCTCTAATGGGCATCCAGTGCCCCGGGGGCATCCACTGAGCTAACTCACTGTCTGAGAGCCCACTTTTTTCTTAGTTCTGGTAAAATCTTTAAAGAGCCAGTGACTGCTGCCTGAGAGATCCCTGGTAACCCTGGATATGTGTCTGTGGCAGCAATTTACCCACAAAATACAGCTGTCGTGTGTAGCCACTGAACTCGACCGTTCAGGGCATGGTAGTGTGACCATGAAGGGATCCACATCTGTGTCTGTAGCCAATGGGTCACTAGGAAGCCATGACACAAGCCTGGAGAACAAAAACTCAAAGAAGCATGAGCAGAGACAATTCCAGGAGAGTTCACCATCTCACGTCTGCTCGAGCACTTACCGTCCCCTTTCTTTGCGCTGGAGGTTAGTAGCTGTGACCGTTCAATGACACATGGACACGCTGGCTCTGTCTCCCTCCCGTGTCATTGATGCTTGCTCCTCTCAGAGCCCCTGTTGCCTGAAGCTGATGGCTTTGGTCCCTTAGTGTCTAGTCACGCCCTCCATGGCGTCCCTGCTGTTATTCTCCTAGGAGAAGACTTGCTTTCTAATCGGAAGTGACCTAATTGTCTGGCTTATGTATGACTTACGACCTGAAAAACACTTAGTCACCTTTAAAAAGAATTCCGCACACTGGGGTGGCGCCTCTGGCAGGTGATCTGTCACCACCCGCTTCAGAAAATGGAATTCGAGGGTTTCGGTGTTTCCAAAAAACCGAGTGTGAGAATTTATTAGTTCCAGTTTCTCTTGGAACGGATGTTCAGTTTTAATCATTTGTTCTTATTTTGAAGTGGAAACCTTCCTATTGATATCACAAATTCGGTGCTAGGAGATTTCGATTCTAGTCCCAAGTCATGAGAGGAGCCCCACAGAGAATAAATAGTGAGTCAGGTTCTAGAACTTTGCAATTAAGATTGTGTGAGAGGAAATACCGGCGTCTGCCGGGTGTGCTCTGTGGGGGCCGCCTCCTGCTACGCACCGTGAGTGTTGTCTGTCTGAATGATGAACTCAGCTTGTGACGGACAATCTGTGCTTCAGCTCCAGGAGGCTCAGCCAGGTCATGGCCATGCCTTTGCAGACACTTTTTGAAACGCTGTCCAATCATTGCTTTCCTACTTAACGATCTCTTCCTTCTGCCCGGGAACCGTTTTCTTTAAAAAGGGATTGCCTATATACACAGGAGTATCAACTCTTTTTTTTTTTTTTGGAGACAACATCTATGCAGTTCTGGCTGGCTTGGAACTCACTGTGCAGACCAGACCTCTACGTCCTGAGTGTGCGGCATCAAGCCCAGCCAGAAGTTTCAGCTTTAAATAATCTTAAGGATGAAAAAAAGATTAAAAAAGCTGGATAAGGAATTTTAACCCCTCCCTGCCTGGCGTGGAAATCCAAGTGTGCTTTCTTTGGTAGCTTATCGTCCAAATACATCCGCACCTTATTACCCCTTACTAGAACCTCCTGCATTGCCAGAAATTAAGTCACATGTTGCACGGTCCCTAGGCAGATTGCAGGGTCTCACAGAATCGTGTTTCTGGTGGGGACCTTCCTGTCTCCAGGCCCCGGCAGTAACGGAGCTGCTGTGGCCCTTTGGGATTAGCTCACCCACCCACAGCAGCACTGGGACCCAAGGCAGTGCTTACCTAACACAGCCTAAAGTCAGCTTCCACGAGCTGCAGCTCCTGCTCCCGCCCGCTCCAAGGCTGTGTCACCTCCGTGGACAGACATGGAGATCAGTGCCTCAAGCAGCCTGTAATCCCACTAGTTGGGAAGGATCAAGAGCTCAAGGCTAGCCTGAGCTACATACCAAGGCCCAAAGCTCCCTCAGAGGAAATCAATTCACTTTGAAAAAGAACGAGTCTCAAAAGTCACCCTCTCGGCCCAGGAGAGGTCCTGGTGGCAGACGGGAGATCACATTGTCCCATCATCTCCATCCTCTTGTCAAGAAGCCTTCTAGCTTCTGACCTCCACACTCCACTGTGGCACGATGGGTACACACACACACACACACACACACACACACACACACACACACACTATCAGTGTAAAGTGGGGGGTGCTGGAGAGATGGCACAGCAGTGAAGAGCCCTTGCTGTTCTCAGAGAAGCAGAATTCCGTTCCCAGCACCTACATGTCTGTTCACACCCCCATGACTCCAGTTCCAAGGGTCCTGTTGCCCTTTTTTAGCTGAGCTCGTGCATGCCCTAGAGTGTGTGCACACACATTTACACACACACACCACACACCACACACACACAGGTGCACGTGCGCATAAAAATAAATATTTTTTTCCAAAGCTAATGTTAAAAAATAAAAACTAAACACCAAGAGGAGGGGCTGCCAGTGACCCCAGCGCTCAGGAGACAAGGGAAGGAAGGCTCCCCGAAAACCTGAGGCCACCCCAGCCAGGGGTGTACCTTGGGTAACCTTGTCTCAAAAGTAATATTTTAAAAAGAGTCTGCTTAAGATGTCCTGGGAGAGAAGTGCTATGCATTTTTTTCTCCTTTTAGGGTCACTATGTGTCACCGCTAGGGGTCATTATGTCACCTATGTCACCGCTATGCCTAACAGGTTTAAGGCCCTGGGGTCTGTTCCCAGCACCTCCCCAAGTCACCCTCCCCGGCAAGTTGGTTTCATAGGCATCTACTGGGCGGTGACTCTGCAGGGCCACGTCGGACCCTCCTCACACCTTTGGTACCCAAGATGCTAAGAAGTGTTTCTCTCACGACCAACCCCTCCTGTGAACTTTTGCACAGATCTGCCCGGCCGTTTCACAAGTCCACAGGGAGCTGATGTTATGAGTCCAGTCAGATGCCCAAATGCCTCCTCTTCTGACGTGTGTTTTCTCTCTCTCTCTCTCTTCCTCTCTTCCCGTTTGTTACCTCTTCAATTTTCCGTGAAG
Seq C2 exon
CTTTCGCTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258:ENSRNOT00000011224:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]