BtaINT0063352 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100313477-100314811:-
Coord C1 exon
chr11:100314614-100314811
Coord A exon
chr11:100313660-100314613
Coord C2 exon
chr11:100313477-100313659
Length
954 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GCTCCATCTCTTACACGTAGCTT
3' ss Score
4.92
Exon sequences
Seq C1 exon
GATTCACAGCTGGTCGTAGAAGCTTATAAGTCTGGGTTCGAGCCTCCAGGAGACATTGAATTTGAGGATTACACTCAGCCTATGAAACGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAATCAGAGCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCATTCATCAAAAAAAATAAG
Seq A exon
GTACTGATGACTGGACCCAGTGTGATATGAGTGTTACAAGGTGTGGAGATGTTCACTCTGTCTTTTAGTCTTTAAAGGAATGAAGATTTTTAAGCTCGTAGTTTCAGAATGCAAACAGAAGGCTAGTGTGCTGTTTTGTTTTAAGGCAATATCTCTCTTCGGTGGTGGTACCTTGGCCATGGCCATTTGTCTTATTTCAGATGCACTTATCACCTGCACCGTGTCACCCACACTAACAGACTACTGACCTCTGGCCGTTTCGCATCACGCCTTTCACTCCTAAGTCTCCTAGATTGCTGGTTCCCTGGGCTGAGAGAAGGGACGTTGTGCCACATTTCTATAACCATGTATCAGCATCTCTAATCGAAATGGTTTCCATGGATTAACAACTTGGTTTTGAGCTCATGTTAACATATGTATCCATGAACATTTTTTATTTTCTTTCTAGAGTGTGATACGTAGGTGCATGGCAGCATTAACCTGGGCATAAAGTGGGTGATCGAGGCGACACGAACCGCTTTAACCTTAGAATAATTTAAAATTTCGTTTTAAGACTGTCTTGCTGTTTTCACAACCTTAGCATTTAAGGACTTTCATTTTCTCCCATCCAGCTGTGTTAGTCTAGGTGGCCTAGAAGTATTTACCCTTCTGGCTTAGACTGGGTTAGGGTACCTAGTTAGAACGGTAGTTTGCATGTCAAAGTCTGCATGAGCTTCTTGTCAGATATTTCTTGCTCTTCTTCTGTTGCTTTACTTACTAAAACTCCCACTTTCACCATATTCTCCATTTAACATGTCCTTCCATGTTTTCCTTTGGACCATGGCCTAAATTTTTAATTGTTTGTGTTTGACTTGCTTTGGATTTCAAATATTATTTGATGCTTATTTTTGTTTTGTGTCTTATCTTCTTGTTTCTGATTTTTTACTCTGTCACCGCTCCATCTCTTACACGTAG
Seq C2 exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCACCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGTCTAAAGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313:ENSBTAT00000027072:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.710
Domain overlap (PFAM):
C1:
PF078236=CPDase=PD(1.3=3.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGCCTCCAGGAGACATT
R:
CCCACGCTTTAGACTCCTGAA
Band lengths:
345-1299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development