MmuINT1010412 @ mm10
Intron Retention
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31052985-31054218:-
Coord C1 exon
chr2:31054024-31054218
Coord A exon
chr2:31053168-31054023
Coord C2 exon
chr2:31052985-31053167
Length
856 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTCCACCCCTCACATTGTAGCTT
3' ss Score
7.83
Exon sequences
Seq C1 exon
GACTCCCAGCTGGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCTGGAGACATTGAATTCGAAGATTACACACAGCCAATGAAACGCACAGTGTCAGACAACAGCCTTTCCAGCTCCAAAGAAGGCAAGCCTGAGCTCAGATTTGGCGGCAAGTCCAGAGGCAAGCTCTGGCCATTCATCAAGAAAAACAAG
Seq A exon
GTACTGGCCATTTGGACCCTGCGTGGGCTGTGAGCTACAGATGCAGAGTCTCAGAGTTTATCTTTTGGTCTTAATCAAACTAAGATCTGGACTTCCAGAGAGCGAGAGAGGACAGTTAGTGTGCTGCGTTCAATTCACGATTCAAACGGTCTGTCTCTGGTGTTGGAGTCTTTGCCATGGCCTCTGTCTTATTGCAGATGCGTTGTCCCAGGACCGGGTCACCCACACTAACATCACTGACCTCACAGCCCTGTCACCCACCCCCATCCTCCCAGACTGCTGGGAGCAAGGGGACCGAGTCCCATCTAATCAAGCTTGCCAGCCTGACCTTGGTTTTGACACGTTAACCTGTCTCTGTGAATATTTTTCCCTTTTCTTTTCATAGCGTGGTATGTAGGTGCATGACAGCTAACCCGGCGGCCTAAACCGGATGGAAGTGGCCTTACTGCATTAACCTTAGATTAGACTGATTGTCTGAGTTTTCCAGGACAGGACTGTCCCCCTGTTTTAGACCCCCTCTCCCCCATCGAACTGCGTTAGCTTAGATGTGGACGTGTTTACCTCTGGCTTAAACTGGTTCTAGAACGACTAACGAGAGCCTAGATTGCATGTCACTGTCTGCATGAGCTTTGGGTCATGATCTTCTGCTGTCCTGTCGCGTACTCACGGACCCTCTCCTTTCCGCCCCCTCTGTGGACCGCATCCTCCATGATTTCTTTTGTACCGTGGCATCGATATTAATGGTTTGTGTTTTACTTGCTTTGGATCTTGAATATGATTTGATGCTTATTTCTGTTTTGTGTCTTCTTGTTTCTGATTTTTTTTTTCTGTCGTCATTCCACCCCTCACATTGTAG
Seq C2 exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCTCCGCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCCAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415:ENSMUST00000113560:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=NA C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGGTCGTAGAAGCCTA
R:
CGGAAGCAGTGGATTTTGGGT
Band lengths:
357-1213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types