HsaINT0065323 @ hg19
Intron Retention
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:17069]
Coordinates
chr9:132686123-132687436:-
Coord C1 exon
chr9:132687239-132687436
Coord A exon
chr9:132686306-132687238
Coord C2 exon
chr9:132686123-132686305
Length
933 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GCTCCATCTCTTACATGTAGCTT
3' ss Score
5.85
Exon sequences
Seq C1 exon
GATTCACAGCTGGTAATAGAAGCTTATAAATCAGGGTTTGAGCCTCCTGGAGACATTGAATTTGAGGATTACACTCAGCCAATGAAGCGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAACCAGACCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCGTTCATCAAAAAAAATAAG
Seq A exon
GTACTGATGGTTGGCGTGAAATGAGTTTTCTAAGGTGTGGAGATTTTGACTTGATCTTTTAGTCTTAGAAAAACTAAGATCCTAAACCTGTAGTTTCAGAATGCAAAAGAAGAAGCTAGTGTGCTACCTTATGTTGAGACAGTATTTCTTTTTGGTGGTGGTATCTTTGCCATGGCCCTGTGTCTTATTTCAGATGCATTATCCTCGTACCGTGACTCCCACACTAACAGAGTACTGACCTCTCCACCGTTTCGCCTCATGCCTTTCCCTCCTTCCTCTCCTAGACTGCTGGTTACCTTGGCTGGGAGAGAGGATGTAGTGGGACATTCCTGTAACACTTTATCCGCACATCTACTGGAAATCGTTACCATGTTAATAACTTGGTTTTGAATTCATGTTAACATGTGTACCCATGAACATTTTTCATTTTCTTTTCATAGTGCGATACATAGGTGCATGACAGCATTAACCTGGGGACGTAGAATATGATCAAGGCAGCATTACTGCTTTAACTTTAGAATGACTTACTATTTATTAATTTAAACAGACTGCTGTTTCCACAACCTTAGCATTGAAGGTCTTTCATTTTCTCCCATCAAGCTATGTTAGTTTAGGTAATGTAGAAATATTTACCCTCTGGCTTAAGCTGGTTTAGAGTAACTAACTAGAGCTATAGTTTGCATGGGAAAGTCTGCACGAGCTTCTTGTCAGATATTTCTTGCTCTTCTGTCGCATTACTTACTAAACCTCCCAACTCTCATCATATTCTTCATTTAACCACCTCCTACATGTTTTCTTTTGGACCATGGCCTAAAATTTAATTGTTTGTGTTTTACTTGCGTTGGATTTCAAATATTATTTGATGCTTATTTTTGTTTTGTGTCTTCTTGTTTCTGATTTTTACTCTGTCACGGCTCCATCTCTTACATGTAG
Seq C2 exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCTCCCCCTCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239-FNBP1:NM_015033:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=NA C2=0.734
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCTCCTGGAGACATTGA
R:
CCACGCTTTAGGCTCCTGAAG
Band lengths:
342-1275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)