HsaEX0026116 @ hg19

Exon Skipping

Gene

ENSG00000187239 | FNBP1

Description

formin binding protein 1 [Source:HGNC Symbol;Acc:17069]

Coordinates

chr9:132671169-132687436:-

Coord C1 exon

chr9:132687239-132687436

Coord A exon

chr9:132686123-132686305

Coord C2 exon

chr9:132671169-132671278

Length

183 bp

Sequences

Splice sites

3' ss Seq

GCTCCATCTCTTACATGTAGCTT

3' ss Score

5.85

5' ss Seq

GGGGTAAGT

5' ss Score

9.65

Exon sequences

Seq C1 exon

GATTCACAGCTGGTAATAGAAGCTTATAAATCAGGGTTTGAGCCTCCTGGAGACATTGAATTTGAGGATTACACTCAGCCAATGAAGCGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAACCAGACCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCGTTCATCAAAAAAAATAAG

Seq A exon

CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCTCCCCCTCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGTGGG

Seq C2 exon

GGTGCAACACCGGAGGATTTCAGCAACCTCCCACCTGAACAAAGAAGGAAAAAGCTGCAGCAGAAAGTCGATGAGTTAAATAAAGAAATTCAGAAGGAGATGGATCAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000187239_MULTIEX2-1/3=C1-C2

Average complexity

C1*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

Show PDB structure

Features

Disorder rate (Iupred):

C1=0.641 A=0.734 C2=0.979

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF039618=DUF342=FE(28.8=100),PF136541=AAA_32=FE(24.0=100),PF143891=Lzipper-MIP1=PU(34.9=78.4),PF0396210=Mnd1=PU(28.1=73.0),PF154561=Uds1=PU(37.8=91.9),PF0043516=Spectrin=PU(32.1=70.3),PF0218511=HR1=PU(31.5=62.2)

Main Inclusion Isoform:

ENSP00000415602