GgaEX0005470 @ galGal4
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr17:5743349-5756476:-
Coord C1 exon
chr17:5756279-5756476
Coord A exon
chr17:5754725-5754907
Coord C2 exon
chr17:5743349-5743458
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCTCCATCTCTTATACGTAGCTT
3' ss Score
6.09
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GATTCACAAATGGTAATAGAAGCCTTTAAATCAGGGTTTGAGCCTCCAGGAGATGTTGACTTTGAGGACTTCACTCAGCCCATGAAGCGGACTGTCTCCGAATCCAGCCTTTCCAACTCCAGAGGGGATGGGAAGTATGAGCCGAAGTTTGGTGGCAAATCCAAGGGCAAGTTATGGCCATTCATCAAGAAAAATAAG
Seq A exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCCCCTCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGCGGG
Seq C2 exon
GGAGCAGGGCCAGAGGACTTCAGCAATCTCCCACCTGAACAAAGAAGAAAGAAACTTCAGCAAAAAGTGGATGAGCTCAACAAAGACATTCAGAAGGAGATGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088_MULTIEX2-1/3=C1-C2
Average complexity
S*
Mappability confidence:
75%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.644 A=0.689 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF122293=PG_binding_4=PU(15.2=24.6)
C2:
PF122293=PG_binding_4=FE(36.4=100),PF154561=Uds1=PU(36.0=86.5),PF0218511=HR1=PU(25.8=43.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGAGCCTCCAGGAGAT
R:
TGAGCTCATCCACTTTTTGCTGA
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]