GgaALTA0002020-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004088 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr17:5754725-5756476:-
Coord C1 exon
chr17:5756279-5756476
Coord A exon
chr17:5754821-5754877
Coord C2 exon
chr17:5754725-5754820
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTTTAACATCCCCCCATCAGCCC
3' ss Score
4.64
Exon sequences
Seq C1 exon
GATTCACAAATGGTAATAGAAGCCTTTAAATCAGGGTTTGAGCCTCCAGGAGATGTTGACTTTGAGGACTTCACTCAGCCCATGAAGCGGACTGTCTCCGAATCCAGCCTTTCCAACTCCAGAGGGGATGGGAAGTATGAGCCGAAGTTTGGTGGCAAATCCAAGGGCAAGTTATGGCCATTCATCAAGAAAAATAAG
Seq A exon
CCCCCTCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAG
Seq C2 exon
TCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-19-18,19-17,19-16-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=NA C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF122293=PG_binding_4=PU(15.2=24.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCCTTTCCAACTCCAGA
R:
TGAACTCGTTGAAGCGATGGG
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]