RnoALTA0015653-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9885986-9887262:-
Coord C1 exon
chr3:9887068-9887262
Coord A exon
chr3:9886082-9886138
Coord C2 exon
chr3:9885986-9886081
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTTTAACATCCCCCCACCAGCCT
3' ss Score
4.87
Exon sequences
Seq C1 exon
GACTCCCAGCTAGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCCGGAGACATTGAATTCGAAGATTACACACAGCCCATGAAACGCACGGTGTCAGACAACAGCCTTTCCAGTTCCAAAGAAGGCAAGCCCGAGCTCAAGTTTGGAGGCAAGTCCAGAGGCAAGCTCTGGCCGTTCATCAAGAAAAACAAG
Seq A exon
CCTCCCCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAG
Seq C2 exon
TCTCCCAAGCAGCAAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258-14-15,14-14,14-13-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=NA C2=0.711
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTCAGACAACAGCCTTT
R:
GGAGAGGGGTTCCTTTTGCTG
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]