DreALTA0012115-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6235724-6244227:+
Coord C1 exon
chr21:6235724-6235918
Coord A exon
chr21:6244036-6244131
Coord C2 exon
chr21:6244132-6244227
Length
96 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
GCTCGTGTCTTTACCGGTAGCTT
3' ss Score
6.07
Exon sequences
Seq C1 exon
GACTCATCTCAGGTCATTGAGTCGTATAAGTCCGGCTTCGAGCCTCCCGGCGATGTGGAGTTCGAGGACTACGGTCAGGCCATGAAGAGGACGGTTTCTGAGACCAGCCTGACCAACTCACGCTCAGAAAACAAACCTGAACGCTCCAGCAAGAGCAAGAGCAAAACCCTCTGGCCTTTTATTAAGAAAAACAAG
Seq A exon
CTTATGTCCCTGTTAACGTCCCCCGTACCTCGCCAGCCCCCCCCTGACCCCCCCTCACCTTCTGCTGTGACCCCTGACCCCTGCCCCGCTCCCCAG
Seq C2 exon
ACCCCCAAACAGTGCAAGGAGCCCCTGTCGCACCGCTTCAACGACCTCATGACCTCCAAGCCCAGAATGCAGTGCCTCAGGAGCCTGCGGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028-9-13,9-12,9-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=NA C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
ENSDART00000163577fB2810
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAGACCAGCCTGACCAA
R:
CTCCTGAGGCACTGCATTCTG
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]