GgaALTA0002020-3/4 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004088 | FNBP1
Description
NA
Coordinates
chr17:6317240-6318991:-
Coord C1 exon
chr17:6318794-6318991
Coord A exon
chr17:6317336-6317422
Coord C2 exon
chr17:6317240-6317335
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCTCCATCTCTTATACGTAGCTT
3' ss Score
6.09
Exon sequences
Seq C1 exon
GATTCACAAATGGTAATAGAAGCCTTTAAATCAGGGTTTGAGCCTCCAGGAGATGTTGACTTTGAGGACTTCACTCAGCCCATGAAGCGGACTGTCTCCGAATCCAGCCTTTCCAACTCCAGAGGGGATGGGAAGTATGAGCCGAAGTTTGGTGGCAAATCCAAGGGCAAGTTATGGCCATTCATCAAGAAAAATAAG
Seq A exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCCCCTCCTCCTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAG
Seq C2 exon
TCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-15-15,15-14,15-13,15-12-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF122293=PG_binding_4=PU(15.2=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGACTTCACTCAGCCCA
R:
GGAGAGGGGTTCCTTTTGCTG
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]