MmuEX0032284 @ mm9
Exon Skipping
Gene
ENSMUSG00000026826 | Nr4a2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:MGI Symbol;Acc:MGI:1352456]
Coordinates
chr2:56960972-56961676:-
Coord C1 exon
chr2:56961474-56961676
Coord A exon
chr2:56961134-56961150
Coord C2 exon
chr2:56960972-56961029
Length
17 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGGTATTAATTGCAGGTC
3' ss Score
8.65
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
Exon sequences
Seq C1 exon
TTCCAGGCAAACCCTGACTATCAGATGAGTGGAGATGATACCCAACATATCCAGCAGTTCTACGATCTCCTGACCGGCTCTATGGAGATCATCAGAGGGTGGGCAGAGAAGATCCCTGGCTTTGCTGACCTGCCCAAAGCCGACCAGGACCTGCTTTTTGAATCAGCTTTCTTAGAATTATTTGTTCTGCGCTTAGCATACAG
Seq A exon
GTCCAACCCAGTGGAGG
Seq C2 exon
AATATGAACATCGACATTTCTGCCTTCTCCTGCATTGCTGCCCTGGCTATGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026826-'9-10,'9-9,10-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(33.8=100)
A:
PF0010425=Hormone_recep=FE(30.3=100)
C2:
PF0010425=Hormone_recep=FE(30.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACCAGGACCTGCTTTTTG
R:
GCAATGCAGGAGAAGGCAGAA
Band lengths:
102-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: