GgaEX6043344 @ galGal3
Exon Skipping
Gene
ENSGALG00000012538 | E1C6K9_CHICK
Description
NA
Coordinates
chr7:37664279-37665757:-
Coord C1 exon
chr7:37665555-37665757
Coord A exon
chr7:37664624-37664802
Coord C2 exon
chr7:37664279-37664535
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGCTGTCGCGCTCCCCGCAGGTC
3' ss Score
11.67
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTCCAGGCTAACCCCGACTACCAGATGAGCGGGGACGACACTCAGCACATCCAGCAGTTCTACGACCTGCTCACCGGCTCCATGGAGATCATCCGCGGCTGGGCAGAGAAGATCCCCGGCTTCACCGACCTGCCCAAAACCGACCAGGATCTGCTCTTCGAGTCCGCCTTCCTCGAGCTCTTCGTGCTGCGCCTGGCATACAG
Seq A exon
GTCGAACCCCGTGGAGGGGAAGCTCATCTTCTGCAATGGGGTTGTCCTGCACCGGCTGCAGTGCGTCCGCGGCTTCGGGGAATGGATCGATTCCATCGTTGAGTTTTCCTCCAACTTGCAGAACATGAACATCGACATCTCGGCATTCTCCTGCATTGCTGCCCTGGCCATGGTGACAG
Seq C2 exon
AGAGGCACGGGCTCAAAGAACCCAAGCGGGTGGAAGAGCTGCAGAACAAGATAGTGAATTGTCTCAAGGACCATGTGACTTTCAACAACGGGGGCCTGAATCGCCCCAACTATTTGTCCAAACTCTTGGGGAAGCTCCCCGAACTCCGCACGCTTTGCACGCAGGGGCTGCAGCGCATTTTCTACCTGAAACTGGAGGATTTGGTGCCACCGCCAGCAATAATCGACAAACTCTTCCTGGACACTTTACCTTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012538-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(33.8=100)
A:
PF0010425=Hormone_recep=FE(30.3=100)
C2:
PF0010425=Hormone_recep=PD(34.3=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCTACGACCTGCTCAC
R:
CCCCCGTTGTTGAAAGTCACA
Band lengths:
244-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]