BtaEX6009721 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003650 | NR4A2
Description
Bos taurus nuclear receptor subfamily 4, group A, member 2 (NR4A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076208]
Coordinates
chr2:40015222-40017015:+
Coord C1 exon
chr2:40015222-40015424
Coord A exon
chr2:40015817-40015995
Coord C2 exon
chr2:40016122-40017015
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGGTATTAATTGCAGGTC
3' ss Score
8.65
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTCCAGGCGAACCCTGACTATCAGATGAGTGGAGATGACACCCAGCATATCCAGCAATTCTATGATCTCCTGACTGGCTCCATGGAGATCATCAGGGGCTGGGCAGAGAAGATCCCGGGCTTCACTGACCTGCCCAAAGCCGACCAAGACCTGCTTTTCGAATCGGCTTTCTTAGAACTATTTGTGCTGCGATTAGCCTACAG
Seq A exon
GTCCAACCCAGTGGAGGGTAAACTCATCTTTTGCAATGGGGTGGTCTTGCACAGGTTGCAATGTGTTCGTGGCTTTGGGGAATGGATTGATTCCATTGTTGAATTCTCCTCCAACTTGCAGAATATGAACATCGACATTTCTGCCTTCTCCTGCATCGCTGCCCTGGCTATGGTCACAG
Seq C2 exon
AGAGACACGGTCTCAAGGAACCCAAGAGAGTGGAGGAGCTGCAAAACAAGATTGTAAATTGTCTCAAAGACCATGTGACTTTCAATAATGGGGGTTTGAACCGCCCCAACTATTTGTCCAAACTGTTGGGGAAGCTCCCAGAACTCCGTACACTTTGCACACAGGGGCTACAGCGCATTTTCTACCTGAAACTGGAAGATTTGGTACCACCACCAGCAATAATTGACAAACTTTTCCTGGACACTTTACCTTTCTAAGACCTCCTTCCATGCACTTCAGAGAAACTGGAAAGAAACCTAAAACTGTCCAGAGGGGGCAAGTGACAAGGGCAGAGAGATTCCCCTGAGCTGTCTCAGCTCTAGTCAGCCCCCTCCCCTTCCATACACCCTGACCCTTGATCCCTAAAGAAAAAAACAGAAACAAAAAAAACAAAAAACTGTTGCTATTTCCTAACCTGCAGGCAGAACCTGAAAGGGCATTTTGGCTCCGGGGCATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003650-'12-10,'12-7,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(33.8=100)
A:
PF0010425=Hormone_recep=FE(30.3=100)
C2:
PF0010425=Hormone_recep=PD(34.3=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTGACTGGCTCCATGG
R:
GGCGGTTCAAACCCCCATTAT
Band lengths:
244-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]