MmuEX1018772 @ mm10
Exon Skipping
Gene
ENSMUSG00000026826 | Nr4a2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:MGI Symbol;Acc:MGI:1352456]
Coordinates
chr2:57106830-57108739:-
Coord C1 exon
chr2:57108723-57108739
Coord A exon
chr2:57108561-57108618
Coord C2 exon
chr2:57106830-57108412
Length
58 bp
Sequences
Splice sites
3' ss Seq
AATTCTCCTCCAACTTGCAGAAT
3' ss Score
8.88
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTCCAACCCAGTGGAGG
Seq A exon
AATATGAACATCGACATTTCTGCCTTCTCCTGCATTGCTGCCCTGGCTATGGTCACAG
Seq C2 exon
AGAGACACGGGCTCAAGGAACCCAAGAGAGTGGAAGAGCTACAAAACAAAATTGTAAATTGTCTTAAAGACCATGTGACTTTCAATAATGGGGGTTTGAACCGACCCAACTACCTGTCTAAACTGTTGGGGAAGCTGCCAGAACTCCGCACCCTTTGCACACAGGGCCTCCAGCGCATTTTCTACCTGAAATTGGAAGACTTGGTACCACCACCAGCAATAATTGACAAACTTTTCCTGGACACCTTACCTTTCTAAGACCTTCTCCCAAGCACGTCAAAGAACTGGAAAGAAAAAAAAAATAACATCCAGAGGGGGCTGGTCACATGGGCAGAGAGCTGGTTGAAGTGTCCAGTTCACCTTATCTCCCTTCTGTAGACCCCTAGCCCTCACCCCTTAAGTAAACAAACAAACAAACAAACCACAAATAAAAACTGTCGCTATTTCCTAACCTGCAGGCAGAACCTGAAAGGGCATTTTGGCTCCGGGGCATCCTGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026826-'18-21,'18-20,19-21
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(6.6=100)
A:
PF0010425=Hormone_recep=PD(16.5=75.0)
C2:
PF0010425=Hormone_recep=PD(34.3=79.1)
Main Inclusion Isoform:
ENSMUST00000183542fB13759
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types