RnoEX0060872 @ rn6
Exon Skipping
Gene
ENSRNOG00000005600 | Nr4a2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:RGD Symbol;Acc:3202]
Coordinates
chr3:43111240-43113705:-
Coord C1 exon
chr3:43113503-43113705
Coord A exon
chr3:43113002-43113180
Coord C2 exon
chr3:43111240-43112853
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGGTATTAATTGCAGGTC
3' ss Score
8.65
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTCCAGGCAAACCCTGACTATCAGATGAGTGGAGATGATACTCAACATATCCAGCAGTTCTACGATCTCCTGACTGGCTCTATGGAGATCATCAGAGGGTGGGCAGAGAAGATTCCTGGCTTTGCTGACCTGCCCAAAGCCGATCAGGACCTGCTTTTTGAATCAGCTTTCTTAGAATTATTTGTTCTACGCTTAGCATACAG
Seq A exon
GTCCAACCCAGTGGAGGGTAAACTCATCTTTTGCAATGGGGTGGTCTTGCACAGGTTGCAATGCGTGCGTGGCTTTGGGGAATGGATTGATTCCATTGTTGAATTCTCCTCCAACTTGCAGAATATGAACATCGACATTTCTGCCTTCTCCTGCATTGCTGCCCTGGCTATGGTCACAG
Seq C2 exon
AGAGACACGGGCTCAAGGAACCCAAGAGAGTGGAAGAGCTACAAAACAAAATTGTAAATTGTCTTAAAGACCATGTGACTTTCAATAATGGGGGATTGAACCGACCCAACTACCTGTCCAAACTGTTGGGGAAGCTCCCAGAACTTCGCACCCTTTGCACACAGGGGCTCCAGCGCATTTTCTACCTGAAATTGGAAGACTTGGTACCACCACCAGCAATAATTGACAAACTTTTCCTGGACACCTTACCTTTCTAAGACTTTCTCCCATGCACGTCAAAGAACTGGAAAGAAAAAAAAAATCCAGAGGGGGCTGGTCAAGATGGGTAGAGAGCTGGCTGAAGTGTCCGGTTCATGTCTCCCTTCTGTAGACCCCTAGCCCTCACCCCTAAAGTAAACAAACAAACAAGCAAACAAACAAACACAAATTAAAAACTGTTGCTATTTCCTAACCTGCAGGCAGAACGTGAAAGGGCATTTTGGCTCCGGGGCATCCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005600-'12-13,'12-10,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(33.8=100)
A:
PF0010425=Hormone_recep=FE(30.3=100)
C2:
PF0010425=Hormone_recep=PD(34.3=79.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGATCAGGACCTGCTTTTT
R:
AGGTAGAAAATGCGCTGGAGC
Band lengths:
252-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]