DreEX6021002 @ danRer10
Exon Skipping
Gene
ENSDARG00000044532 | nr4a2b
Description
nuclear receptor subfamily 4, group A, member 2b [Source:ZFIN;Acc:ZDB-GENE-040718-103]
Coordinates
chr6:12230040-12231626:+
Coord C1 exon
chr6:12230040-12230242
Coord A exon
chr6:12230324-12230502
Coord C2 exon
chr6:12230589-12231626
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTTTTCAATTTTCTCACCAGATC
3' ss Score
10.35
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTTCAGACGAGTCCGGAGTATCACAGTGGAGGAGATGAATCTCTGCACATTCAGCAGTTCTACGATCTACTCACTGCCTCAATGAGCATCATTCGCGGATGGGCCGAAAAAATCCCCGGCTTTACCGAGCTGCCCAAATGCGACCAGGAGCTCCTTTTCGAGTCTGCCTTCCTTGAACTCTTCGTGTTGCGGCTGGCGTACAG
Seq A exon
ATCTAACCTGCCAGAGGACAAACTCATCTTTTGCAACGGAATGGTTTTACACAAGTTGCAGTGCGTGCGAGGCTTTGGGGAGTGGATCGACTCTATTGTCGAGTTTTCTTCTAATCTTCAGAGCATGAGCTTAGACGTGTCTGCCTTCTCCTGCATAGCCGCTCTCACCATAGTAACAG
Seq C2 exon
AGAGACACGGACTAAAGGAGCCCAAGAAAGCAGAGGAACTTCAAAACAAGCTCATAAACTGTCTGAAGGATCAGGTGTCCTGCAGTGGTGAATTGTCTAAACTGTTGGAGAAGCTGCCGGAGGTGCGCGCGCTGTGCACGCAGGGTCTGCAGCGCATCTTTTACTTGAAACTGGAGGATTTGGTGCCCACGCCTGCGATCATTGATAAACTCTTTCATGACACTTTACCATTCTAAACAATCTCGTCTGAACTGAAGCAGGTTCTCGAAACCTTGTTATTCTTCGATGTTGCGGACTTTTTAGGAAATGAAAATGGCGGATGGTATTTTTAAAGATCGGAGAAAGACTGCCCGGGACAAAACTGAACAGTCCTATTTGGAGGAAATAATTATTCAAGAAAAATATTATGGAGGAAAAGGGACTATTCTTATGCCTGTTTAAAGTGTATTCAGTTATATACTGAAAATAAATGCGGTGTGGTGGACATGTATTTGTATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044532-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(35.1=97.1)
A:
PF0010425=Hormone_recep=FE(31.9=100)
C2:
PF0010425=Hormone_recep=PD(32.4=77.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTACCGAGCTGCCCAAAT
R:
TAAAAGATGCGCTGCAGACCC
Band lengths:
248-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]