MmuEX0000333 @ mm9
Exon Skipping
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30651665-30653500:-
Coord C1 exon
chr2:30653388-30653500
Coord A exon
chr2:30651921-30652086
Coord C2 exon
chr2:30651665-30651803
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTCTCTCTTCTAGTCC
3' ss Score
12.48
5' ss Seq
CGTGTGAGG
5' ss Score
4.04
Exon sequences
Seq C1 exon
CCCCGCTGGAGAAGGCTCAAGACCCCGAAAACGCTATTGTCCCTTCCGGGTACGATTCGCAGACGAGACCCTGCAGGACACAGCACTCCGGTACTGGGAACGCAACCGTGCAG
Seq A exon
TCCGGCAGAATATCTTTCCGAGTGAGCAGACGGCTTTGCCAGCTGTATCTGTGTCAGAACGGGTGCTCGGGAGTGTTGGGAGATGGTTGGACAGTCTGCCCAGAGCCCTTTATCCCAGGGTCCAAGACACTGTGGCCGGCTCCTCATTCTGGACCTGCCCCCGCGT
Seq C2 exon
GTCAGCTCAGGAACCTCAGCTCTACCTTTCTGAGGACTCCTCCGTGAGCAGCCACCTACCCTTCATCTCCAGGGCCACCATCCCAAGGCCACGGGGAGGCCTCAGAACCTTCCTGGACACCCCTAACAATGTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320-'6-10,'6-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGGCTCAAGACCCC
R:
CCACATTGTTAGGGGTGTCCA
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: