MmuEX0000333 @ mm10
Exon Skipping
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30796145-30796862:-
Coord C1 exon
chr2:30796762-30796862
Coord A exon
chr2:30796546-30796566
Coord C2 exon
chr2:30796145-30796283
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTCTCTCTTCTAGTCC
3' ss Score
12.48
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
Exon sequences
Seq C1 exon
GCCCTCCTACTTTAGAGAAAAGGGACCCATTGGCGGTTGGAGCAGAAGTAGGACCACGACAGGGATCAGCTTTGTGGTATAGCAGAAACAGTCACAGGGAG
Seq A exon
TCCGGCAGAATATCTTTCCGA
Seq C2 exon
GTCAGCTCAGGAACCTCAGCTCTACCTTTCTGAGGACTCCTCCGTGAGCAGCCACCTACCCTTCATCTCCAGGGCCACCATCCCAAGGCCACGGGGAGGCCTCAGAACCTTCCTGGACACCCCTAACAATGTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320-'11-13,'11-12,12-13
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGGGATCAGCTTTGTGG
R:
GGAGATGAAGGGTAGGTGGCT
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types